Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1365 a.a., Uncharacterized conserved protein RhaS, contains 28 RHS repeats from Escherichia coli ECRC62

 Score = 65.5 bits (158), Expect = 4e-14
 Identities = 114/478 (23%), Positives = 179/478 (37%), Gaps = 74/478 (15%)

Query: 552  REGQWLESARTLSLVNRRLLSMTRDGGCSLDLAFDVSGRLTAETVSLGKPQQAGRRYAYH 611
            R G+ + S         R+++    G   +   +D  GR+T +         AG  Y Y 
Sbjct: 328  RSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQL------NPAGLSYTYQ 381

Query: 612  FATPEKRAHLITTDAQNNQVI--------------TYFDGVGRQVSEAQLIGTNRDQ-ER 656
            +   EK    IT      +V+               + DG   Q S+   +G  R Q + 
Sbjct: 382  Y---EKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQ-SQFDAVGRLRAQTDA 437

Query: 657  VTRTWRYDALEQLSEVVKHDYLTDGQRSLKSTYSYNHWGNSSRVTRADGSVQIDEYDPLL 716
              RT  Y   + ++ ++      DG+ S    + YNH    +  T  DG     EYD   
Sbjct: 438  AGRTTEYSP-DVVTGLITRITTPDGRAS---AFYYNHHNQLTSATGPDGLELRREYDESG 493

Query: 717  NLRVEGVEGGERLR-RYFNEHNQ-PVKVERLDAGGATVEVESRTYDGLGRCLSVLDNMGN 774
             L  E    G+  R RY N H+  P   E  DA G+    ++ T+   G+ LS  D  G 
Sbjct: 494  RLIQETAPDGDITRYRYDNPHSDLPCATE--DATGSR---KTMTWSRYGQLLSFTDCSGY 548

Query: 775  KRTEFTYDAFDRLMTTLEIPLDGTPQRLQKTDYAPGTSDAMISALAVDGKCLGARTYDSL 834
            + T + +D F ++                             +A+  +      R YDS 
Sbjct: 549  Q-TRYDHDRFGQM-----------------------------TAVHREEGLSQYRAYDSR 578

Query: 835  GRLTSQTRGTGQTTTWEYEPGWTEPVAITSPRGHRQTLTYDKELGVPIRREMTGLPVSAY 894
            G+LT+     G  T +EY     +  A+ +P G R    YD   G  +R    GL  S  
Sbjct: 579  GQLTAVKDTQGHETRYEYNIAG-DLTAVIAPDGSRNGTQYDA-WGKAVRTTQGGLTRSM- 635

Query: 895  RHDATTSMLTRSETDGLIHEYFQDANGHPEKDIQTANGASLTALYSHSPGGRLLHQTAAD 954
             +DA   ++  +  +G    +  D     ++ IQ       T  Y H   G+L+ ++  +
Sbjct: 636  EYDAAGRVIRLTSENGSHTTFRYDVL---DRLIQETGFDGRTQRYHHDLTGKLI-RSEDE 691

Query: 955  GQLSTLEYDIYGRFSRITTGPMVIEQG-YDTLGRPQDLTTVYEGTTVVTKVSYDAWGR 1011
            G ++   YD   R +  T      EQ  YD  G   D++ + EG  V     YD  GR
Sbjct: 692  GLVTHWHYDEADRLTHRTVNGETAEQWQYDERGWLTDISHISEGHRVTVHYGYDEKGR 749



 Score = 34.7 bits (78), Expect = 7e-05
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 1278 QLPGINGQRLDVATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNGYGYAACNPTNM 1337
            QL  + GQ+ D  + LY   +  R YDP    ++  DP+    +GG N Y Y   +P N 
Sbjct: 1158 QLIRLPGQQYDEESGLYY--NRHRYYDPLQGRYITQDPIGL--KGGWNLYTYPL-SPVNS 1212

Query: 1338 MDPSGLW 1344
            MDP GL+
Sbjct: 1213 MDPLGLY 1219