Pairwise Alignments

Query, 503 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 504 a.a., Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system from Sphingobium sp. HT1-2

 Score =  246 bits (627), Expect = 2e-69
 Identities = 178/517 (34%), Positives = 259/517 (50%), Gaps = 55/517 (10%)

Query: 4   RISRELKTLSVWALSLAISGCIGTGGI-------APQ----GQSLNANTLATDDAIQNAA 52
           RIS  ++T  +   +L ++GC     +       APQ    G+SL+A+T+A         
Sbjct: 5   RISFSIRTGGIAVTALLLAGCASIPDLGDKPEIRAPQSVEAGRSLSADTVA--------- 55

Query: 53  QDAHWPTGQWWQAYGDPQLNRWVDLATQHSPSMAMAAARVREARAMAGVAESA----ESL 108
               WP+  WW AYGDPQL   ++   ++SP MA+A AR R+A AMA  + +A       
Sbjct: 56  ----WPSENWWSAYGDPQLTSLIEEGLRNSPDMAVALARFRQATAMAQQSGAALLPTVDA 111

Query: 109 QINSDTTLKRHNW--PKDQFYGPGELSGANTWDNNASLGLSYALD--LWGRESNATERAV 164
             N+  T + +N   PKD F   G       W     +GL + LD  LWG+   +   A 
Sbjct: 112 TANAGVTKQSYNMGMPKD-FVPQG-------WLGTGKVGLDFGLDIDLWGKNRASLAAAT 163

Query: 165 DLAHMSAAEARQAQLELQNNVVRAYIQLSLHYANRDIVAATLAQQQQILDLANTRLNAGI 224
             A  +  +A+QA+L L   +  AY  L+  Y   +I   TL  +     L   R   G+
Sbjct: 164 SEARAAEIDAQQARLALTTAIADAYADLARLYDEAEIQERTLEIRTASQKLVADRRQNGL 223

Query: 225 GTHFDVSQAETPLPETHRQLDALDEEIALSRNQLAALAGKGPGEGAQLQRPSLSLAAPLK 284
            T   V QA+  +     QL A    I L ++Q+AAL G GP  G  + RP +   APL 
Sbjct: 224 ETRGSVRQADATVSSAKAQLAAARVAIELRQHQIAALIGAGPDRGLAMTRPQIGQLAPLG 283

Query: 285 LPSSLPAQLLGQRPDVVARRWQVAAQARGIDVAHAGFYPNVDL-----VGSLGY--MATG 337
           LP+ +   L+ +RPDV A   +  A A  I VA A FYP V L     V SLGY  + TG
Sbjct: 284 LPADVTTNLVARRPDVAAALARTQAAASRIKVARASFYPAVSLSALIGVQSLGYETLFTG 343

Query: 338 ----GGMLEFLAG--KKFNY--NVGPAITLPIFDGGRLRAELGEASAGYDIAVAQYNQTL 389
               GG   F     KK +   + GPAI+LPIF GG+LR +   A A YD AVA Y++T+
Sbjct: 344 TGASGGSTSFADNLFKKDSLFGSAGPAISLPIFHGGQLRGQYRGARATYDEAVASYDKTV 403

Query: 390 VNALKGISDQLIRRESMDKQAAFAAQSVASAQKTYDIAMIAYQRGLTDYLNVLNAQTLLF 449
           + A + ++D +  R ++D++   A  ++A++Q  Y +A   Y+ GL+ YL+VLN +  L 
Sbjct: 404 LGAYQDVADAVTSRRTLDQRLTDAKAALAASQDAYGVAQQRYKGGLSTYLDVLNVEDQLL 463

Query: 450 HQQQIEQQVQAARLSAHAELVTALGGGLGAGDDAPQD 486
             +Q   Q++A+  S    L+ ALGGG  A D   +D
Sbjct: 464 AARQSVAQLEASAFSLDIALIRALGGGFAASDAQSKD 500