Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  263 bits (673), Expect = 6e-75
 Identities = 156/413 (37%), Positives = 229/413 (55%), Gaps = 20/413 (4%)

Query: 29  PADGFVEGAHLNINTRNYYMNRDRRDIHTDDS---KEWGQGFLGIFESGYTQGTVGFGLD 85
           PA    E    ++ +RNY+++ D R          +EW QGF+G   SG+T+GTVG G+D
Sbjct: 20  PALSHAEAPGWSLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGID 79

Query: 86  AHAMLGLKLDGGGGTDGSSILPYGSGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLNNP 145
           AH  LGLKLDGG G  G+ +LP  S +G+A   +S+AG  LKM+  +T+L+ G++ +  P
Sbjct: 80  AHGFLGLKLDGGRGHSGTGLLPRDS-DGRAESEYSSAGAALKMQLGNTQLRYGEMMVETP 138

Query: 146 VIAGGATRMLPQTFRGVSLTNHSLDGWMFEGGQ-ASFTKLYNQSGHRRIGTSYGALPEHT 204
           V   G  R+ P+   G  + N     W  + G+  +F    N S H    + YGA    T
Sbjct: 139 VFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDF-SGYGAT---T 194

Query: 205 DSQHMNWAGVSFSGIDGLTSNLYAAELKDVWNQYYYDLDYTYVVNEMISLNPGLHYYHTQ 264
            ++ ++ AG +F+      + LYA +L++ W Q Y +L+     N  +  N     Y T+
Sbjct: 195 HNRAISLAGATFAPNGPFGAALYAGQLENTWRQAYLNLNLAQ-GNWRLDGN----LYKTR 249

Query: 265 DTGQSLLGDIDNNTYSLHFTVDVGHHSVTAAYQRVNGNTPFDYIAQGDSVYLDNSQQYSD 324
           DTG +  G ID   YSL      G  +++ AYQ+V G+TPFD++  GDS+YL N+ +Y+D
Sbjct: 250 DTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVG-GDSIYLANAIKYAD 308

Query: 325 FNGPNERSWKLKYAYNFGGLGLPGLTSAVSYISGKTDLTKVDPQSRGYSAWYSADGKDAK 384
           FNGP E SW+L+Y  NF  LG PGL+    Y+SG+       P    Y   Y   G   K
Sbjct: 309 FNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQY---GDGGK 365

Query: 385 HWERDIDLKYVVQGGKAKDLAVRLQWATNRGSNGYSAVDRDVDEYRVIVDYPI 437
           HWERDIDLKYVVQ G AKDL++     ++R +   +    D+D   +I++YP+
Sbjct: 366 HWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAG--DDIDRIYLIIEYPL 416