Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  209 bits (532), Expect = 1e-58
 Identities = 143/445 (32%), Positives = 221/445 (49%), Gaps = 28/445 (6%)

Query: 7   FTPLFLAIAATIVPL--AHAADSTPADGFVEGAHLNINTRNYYMNRDRRDIHTDDSK--- 61
           F+P  LA    +  L    A  +  A GF+E A   I  RN Y NRD RD ++  S+   
Sbjct: 6   FSPFPLAPGRRVTGLFLLCAGVNAQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGAS 65

Query: 62  ---EWGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGSSILP-YGSGNGKAPG 117
              EW QGF+   +SGYTQG VG G+DA  M G KLD       S +LP  G    ++  
Sbjct: 66  KREEWAQGFILNVQSGYTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSAD 125

Query: 118 SFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLDGWMFEGG 177
            ++  G   K++  +T LK G +  + P++     R+LP  F G  LT+  L    F   
Sbjct: 126 QYAKMGLAAKVKVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLA 185

Query: 178 QASFTKLYNQSGHR--RIGTSYGALPEHTDSQHMNWAGVSFSGIDGLTSNLYAAELKDVW 235
           +       + +  +  R+          T++ H + AGV +   +  ++    A+L++++
Sbjct: 186 RLDKYTARDSTDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIY 245

Query: 236 NQYYYDLDYTYVVNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVDVGHHSVTAA 295
            Q++  L  +  +  + SL+  +    + D G +  G+ID+  +S      +G H ++A 
Sbjct: 246 RQHFLGLVASQPL-PVGSLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAG 304

Query: 296 YQRVNGNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGLTSAVSY 355
           +QR+ GN+   Y+  G + YL N  Q +DF    ERSW+++Y Y+F  LG+PGLT    Y
Sbjct: 305 WQRMYGNSAMPYL-DGSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRY 363

Query: 356 ISGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDIDLKYVVQGGKAKDLAVRLQWATNRG 415
           I+G  D  KV   S            + K WERD + KY VQ G  KD++VRL+ +T R 
Sbjct: 364 ING--DNIKVPGSS-----------VEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYR- 409

Query: 416 SNGYSAVDRDVDEYRVIVDYPINVF 440
            + Y    RD+DE RVIV Y  ++F
Sbjct: 410 -SNYERWARDMDETRVIVSYNFSIF 433