Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  309 bits (791), Expect = 1e-88
 Identities = 180/456 (39%), Positives = 256/456 (56%), Gaps = 38/456 (8%)

Query: 8   TPLFLAIAATIVPLAH--AADSTPADGFVEGAHLNINTRNYYMNRDRRD----IHTDD-- 59
           +PL LA    +  +     A    ADGF+EG+ L++  RN+Y NRD RD     H     
Sbjct: 5   SPLTLAACLALAGVGSQVVAAEKSADGFMEGSTLSVLNRNFYFNRDNRDSVAPTHNPSKQ 64

Query: 60  -----SKEWGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGS----SILPYGS 110
                S+ WG   +  FESG+TQGTVG GLDA AMLGLKLD GGG +G      +LP   
Sbjct: 65  ADNGYSEAWGHAVITRFESGFTQGTVGVGLDAFAMLGLKLDTGGGRNGGRSSFDVLPVDR 124

Query: 111 GNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLD 170
            +G+A   ++  GG  K+R FDT LK GD+F  NPV+A G +R+LP++FRGV+L N S+ 
Sbjct: 125 -DGQARDEYTKVGGAAKLRLFDTVLKVGDVFPANPVVAAGDSRLLPESFRGVTLENSSIK 183

Query: 171 GWMFEGGQA-SFTKLYNQSGHRRIGTSYGALPEHTDSQHMNWAGVSFSGIDGLTSNLYAA 229
               + G+  + ++  +        T YG      DS  + + G  +   + ++ +L+++
Sbjct: 184 DLTLQAGRLHAMSQPMSSDLRENFVTFYGG---PVDSPWIAYGGGDYRLNEHVSVSLFSS 240

Query: 230 ELKDVWNQYYYDLDYTYVVNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVDVGH 289
            LKD WNQYY     ++ ++E ++L  G +YY   D GQ  LG  DN+ +S    V  G 
Sbjct: 241 RLKDAWNQYYAGTSLSWPLSEALALIGGFNYYKAVDEGQQRLGAFDNDIWSAKLGVRFGA 300

Query: 290 HSVTAAYQRVNGNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGL 349
           H++   +QR NG+  FDY+ Q DS++LDNS QYSDFN P ERSW L+Y  N    G+PGL
Sbjct: 301 HTLALTHQRNNGDDDFDYLRQSDSIFLDNSIQYSDFNAPKERSWMLRYDLNMAAYGVPGL 360

Query: 350 TSAVSYISGKTDLTKVDPQSRGYSAWYSADG------KDAKHWERDIDLKYVVQGGKAKD 403
           +    Y  G       D      +A Y           D K WERDI++KYVVQ G AKD
Sbjct: 361 SFMTRYGKGN------DADYSNANATYMRRDVAGNPLTDQKRWERDIEVKYVVQTGAAKD 414

Query: 404 LAVRLQWATNRGSNGYSAVDRDVDEYRVIVDYPINV 439
           L++R++ AT R     +A + D+DE R+IV+YP+++
Sbjct: 415 LSLRVRQATTRA----TAFESDLDEVRMIVEYPLSI 446