Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  306 bits (785), Expect = 7e-88
 Identities = 168/446 (37%), Positives = 263/446 (58%), Gaps = 27/446 (6%)

Query: 13  AIAATIVPLAHAADSTPADGFVEGAHLNINTRNYYMNRDRRD----IHTDDS------KE 62
           A++  I+  + A   +  +GF++G  +++  RN++ ++D R+    ++ ++       +E
Sbjct: 10  ALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHRE 69

Query: 63  WGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGSSILPYG----SGN---GKA 115
           WG G +   +SG+T+GTVGFG+D   ++GLKLDGG G  G+ +   G    SG+   G+ 
Sbjct: 70  WGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEP 129

Query: 116 PGSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLDGWMFE 175
             S+   G  LK+RAFDTEL+ GD+   +PV+     R+LPQT RG    N+SLDG   +
Sbjct: 130 KDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQ 189

Query: 176 GGQASFTKLYNQSGHRR-IGTSY-GALPEHTDSQHMNWAGVSFSGIDGLTSNLYAAELKD 233
           GG+   +   N S HR  +GT Y G +    D  ++   G  +   D LT  L+++ L D
Sbjct: 190 GGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYL---GGDYRFNDQLTLRLHSSRLDD 246

Query: 234 VWNQYYYDLDYTYVVNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVDVGHHSVT 293
           VWNQ ++ +D+   +   +SL  GL+YY T+D+GQ+L G IDN+++S+H  +  G H   
Sbjct: 247 VWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHGFK 306

Query: 294 AAYQRVNGNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGLTSAV 353
            +Y R++G+TPFDY+     + LD + Q SDFN PNER+W+ +Y Y+F  LG+PGL+   
Sbjct: 307 LSYTRIDGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLSLTA 366

Query: 354 SYISGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDIDLKYVVQGGKAKDLAVRLQWATN 413
            Y+ G    T +D    G +  Y    +D +HWER++ LKYV+Q G AKDL+  L  AT+
Sbjct: 367 RYVRG----TDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATH 422

Query: 414 RGSNGYSAVDRDVDEYRVIVDYPINV 439
           R   G    + +VDE R+IV YP+++
Sbjct: 423 R-VGGDHVAESNVDELRLIVQYPLDI 447