Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  606 bits (1562), Expect = e-178
 Identities = 294/446 (65%), Positives = 353/446 (79%), Gaps = 8/446 (1%)

Query: 1   MKNSLTFTPLFLAIAATIVPLAHAADSTPADGFVEGAHLNINTRNYYMNRDRRDIHTDDS 60
           M ++  FTPLF+A+ ATI P A  AD   ADGF+EG+  N++ RN Y NRD  +    D+
Sbjct: 1   MPSAFRFTPLFIALTATI-PFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHNAGVRDT 59

Query: 61  KEWGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGSSILPYGSGN----GKAP 116
           +EWGQG +  FESGYT G VGFGLDAHAMLGLKLDGGGG  G+SILP    +    G AP
Sbjct: 60  REWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAP 119

Query: 117 GSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLDGWMFEG 176
            SFSTAG  +K++AFDTELKAGDLFL NPVIAGG TRMLPQTFRGVSLTN S+DG + EG
Sbjct: 120 HSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEG 179

Query: 177 GQASFTKLYNQSGHRRIGTSYGALPEHTDSQHMNWAGVSFSGIDGLTSNLYAAELKDVWN 236
           GQ SFT  YNQSGHRRI T YG+L EH  S+H+NWAG S+SG + +T+NLYAAELKD+WN
Sbjct: 180 GQVSFTHPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWN 239

Query: 237 QYYYDLDYTYVVNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVDVGHHSVTAAY 296
           QYY D DYTYVVN+++SLNPG+H+YHTQDTGQ+LLG IDNNTYS+HFTV+ G HSVTAAY
Sbjct: 240 QYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAY 299

Query: 297 QRVNGNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGLTSAVSYI 356
           QRVNGNTPFDYI  GDSVYLDNS+ YSDFN PNERSWKL+Y Y+F G+G+PGL++++SY 
Sbjct: 300 QRVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYS 359

Query: 357 SGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDIDLKYVVQGGKAKDLAVRLQWATNRGS 416
            G+ DLTK    +  Y  +Y  DGK+A HWERD+D+KYV Q G  KDL+V +++AT+RGS
Sbjct: 360 RGEADLTKATQDTTHYD-YYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHRGS 418

Query: 417 NGYSAVD--RDVDEYRVIVDYPINVF 440
            GY+++D   D DE RVIVDYP+NVF
Sbjct: 419 QGYASIDSNSDNDELRVIVDYPLNVF 444