Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  233 bits (594), Expect = 9e-66
 Identities = 157/455 (34%), Positives = 239/455 (52%), Gaps = 50/455 (10%)

Query: 12  LAIAATIVPLAHAADSTPADGFVEGAHLNINTRNYYMNRDRRDIHTDDSKEWGQGFLGIF 71
           +A+A      A A D   + GF+E +H N+  RN Y+NRD++   TDD  EWGQ F+  F
Sbjct: 9   VALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKH-GTDDQIEWGQAFIANF 67

Query: 72  ESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGSSILPY--------GSGNGKAPGSFSTAG 123
            SG+TQGTVG G+DA  +  ++LDGG G +G   + +          GN  +P + +  G
Sbjct: 68  SSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHNLARGG 127

Query: 124 GTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLDGWMFEGGQASFTK 183
             +K R  +T LK GD     PV+     R+LP++F G  +T+  + G     G+  FT+
Sbjct: 128 AAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGR--FTQ 185

Query: 184 LYNQSGHRRIGTSYGALPEHTDSQHMNWAGVSFSGIDGLTSNLYAAELKDVWNQYYYDLD 243
              +S  RR G   G L      + +N  G S+   D  T++LY A+ +DV  ++Y  L+
Sbjct: 186 EARKSAERRDG---GGL------KSINVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLN 236

Query: 244 YTYVVNEMISLNPGLHYYHTQDTGQ-----SLLGDIDNNTYSLHFTVDVGHHSVTAAYQR 298
           Y + +    SL    + Y +    +      L GD  N  +SL  T   G HS T A+QR
Sbjct: 237 YVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGD-SNTIWSLAATYAYGAHSFTLAHQR 295

Query: 299 VNGNTPFDY--------IAQGDS-VYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGL 349
             G+T ++Y        +  G S +YL NS  +SDFN  +ERSW+L Y  +FG  G+PGL
Sbjct: 296 STGSTGYNYGFYQNAGGVGDGGSTIYLANS-YWSDFNAEDERSWQLGYGLDFGAYGIPGL 354

Query: 350 TSAVSYISGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDI--DLKYVVQGGKAKDLAVR 407
           T  ++Y+ G    T+     +G+      +GK     ER+I   ++YVVQ G AKDL+++
Sbjct: 355 TYKLAYVVGDNINTRNVANPQGF-----GEGK-----EREIFNQIRYVVQDGPAKDLSIK 404

Query: 408 LQWATNRGSNG--YSAVDRDVDEYRVIVDYPINVF 440
           L+ +  R +N    +  + D +E RV V+YPI++F
Sbjct: 405 LRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISIF 439