Pairwise Alignments

Query, 440 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  314 bits (804), Expect = 4e-90
 Identities = 176/454 (38%), Positives = 263/454 (57%), Gaps = 36/454 (7%)

Query: 9   PLFLAIAATI---VPLAHAADSTPADGFVEGAHLNINTRNYYMNRDRRDIHTDD------ 59
           PL+LA  + +     ++  A+  P +GF+EG+ L +  RN+Y NRD RD           
Sbjct: 6   PLYLAAVSALSGSYAISAQAEDKP-EGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSGKG 64

Query: 60  -----SKEWGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGS----SILPYGS 110
                S+ W    +  F SG+TQGTVGFG+DA AM+GLKLD G G +G      +LP  +
Sbjct: 65  NTNGYSEAWAHAIISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNGGRSSFDVLPVDN 124

Query: 111 GNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLD 170
             G+A   ++  GG  K+R FDT +K GD+F + PV+A G +R+LP++FRGV++ N S+ 
Sbjct: 125 -KGEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENTSIQ 183

Query: 171 GWMFEGGQA-SFTKLYNQSGHRRIGTSYGALPEHTDSQHMNWAGVSFSGIDGLTSNLYAA 229
           G   +GG+  + ++  + + +    T YG      +S  + + G  +S  D  T ++YA+
Sbjct: 184 GLTLQGGRLHAMSQPVSSNLNDNFVTFYGG---PVNSPWIGYGGGDYSINDNWTVSVYAS 240

Query: 230 ELKDVWNQYYYDLDYTYVVNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVDVGH 289
           +LKDVWNQYY      Y +++ ++L  G +YY   D G+  LG+ DNN +S    V  G 
Sbjct: 241 QLKDVWNQYYAGTSVVYPLSDDLALIGGFNYYKAVDEGKKRLGEFDNNIWSAKVGVRYGA 300

Query: 290 HSVTAAYQRVNGNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGL 349
           H++  ++QR NG+  FDY+ Q DS+++DNS QYSDFN P ERSW L+Y  NF   G+PGL
Sbjct: 301 HTLALSHQRNNGDDDFDYLRQSDSIFVDNSIQYSDFNSPKERSWMLRYDLNFTSYGIPGL 360

Query: 350 TSAVSYISGKTDLTKVDPQSRGYSAWYSADG----KDAKHWERDIDLKYVVQGGKAKDLA 405
           T    Y  G    +  D  +       + D      + K WERD+++KYVVQ G AKDL+
Sbjct: 361 TFMTRYARG----SGADYSNANQFYMRTDDNGNPLDNQKRWERDVEVKYVVQTGPAKDLS 416

Query: 406 VRLQWATNRGSNGYSAVDRDVDEYRVIVDYPINV 439
            RL+ AT R     +A + D+DE RVI++YP+++
Sbjct: 417 FRLRQATTRA----TAFESDLDETRVIIEYPLSI 446