Pairwise Alignments

Query, 499 a.a., deoxyribonuclease from Pseudomonas simiae WCS417

Subject, 496 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  469 bits (1206), Expect = e-136
 Identities = 259/489 (52%), Positives = 331/489 (67%), Gaps = 4/489 (0%)

Query: 4   PRVRSLPARPELFLILGSGLTVVLIVVIVAVLLIREHASTLQAATRSTTNIAQLINADVL 63
           PR     + PEL L LGS L V+ IV IV+ LL RE  S  Q+A RS+ NI QLI +D+L
Sbjct: 6   PRFAVYRSHPELILNLGSCLAVLAIVAIVSYLLARERDSVEQSAVRSSNNIVQLIESDIL 65

Query: 64  RNVELYDLALKGLIAARQREDLAQVSANIQHLVQFDLSTAAPFKGEVLLLDANGTVIADS 123
           RNVELYD +L+GLI A  R++L +V   I+  + F+ +     +G+VL LD  G ++ DS
Sbjct: 66  RNVELYDQSLQGLIWAVGRKELPEVPGPIRQRLLFNEAFVDRKRGDVLWLDKQGNIVGDS 125

Query: 124 STLQPTPRNFANRDYFQVHTKDAQAGLYISRPFKIHCDCDQVWRMAFSRRVSGPNGEFAG 183
           ++  P   NF     F+ H  +A  GL +  PFK     D  W ++FSRR+SGPNGEFAG
Sbjct: 126 TSSVPRKANFGETGVFKAHQHNANLGLLVGPPFKAKLG-DLDWCISFSRRISGPNGEFAG 184

Query: 184 VAVATMRLAYFDQLFNTVTIGNGSSVNLLNNQGFLLAQQPLLESD-MIDKDLSERPNFKR 242
           +A   +RL+YF++LF  + IG+ SS+NL N  G LL +QP    D +I    +ERPNFKR
Sbjct: 185 LAAGALRLSYFNELFQRLDIGHDSSINLFNTDGQLLVRQPYRGQDPLIGTYYTERPNFKR 244

Query: 243 ILREGSGTFQAISAISGTERLYTFTNVGELPLIVVVALSSQDVFARWQRAALLTSGATGI 302
           IL E SG+F A S  SG  R++TF  V +LPLIV+VA S+ +VF  W+R A+L S ATG 
Sbjct: 245 ILSEQSGSFTARSHSSGKLRMFTFARVAQLPLIVLVAHSADEVFESWRRTAILVSVATGG 304

Query: 303 LCIGLLWLTWMLRRELRRRYRAERVLSELAAVDALTGLANRRILDERLRLEWDRAQRSLE 362
           LC+G+LWLT +L RELRRR+ AE  L+ LA+ D+LTGLANRR LD  LR EW RAQRS +
Sbjct: 305 LCVGILWLTLLLGRELRRRHEAEEDLAMLASTDSLTGLANRRRLDHVLRQEWARAQRSRK 364

Query: 363 PLTVLMIDVDHFKAFNDRHGHHGGDAALRTVAQVIGANIRRPADLAARYGGEEFAVVLPH 422
           PL +LM+DVDHFKAFN RHGH GGD ALR VA+ I A IRRPADLAARYGGEEF VVLP 
Sbjct: 365 PLAILMVDVDHFKAFNQRHGHAGGDHALREVAKAIEACIRRPADLAARYGGEEFQVVLPE 424

Query: 423 TDAKGAWVIAEHIRSSIEHLPRVAGDAQPITASIGMSTWDKRSRLSLEALLLSADQALYE 482
           TD  GA ++AE IR+++E L   A DA  +T SIG+      ++  L  LL +AD+ALY 
Sbjct: 425 TDLAGAQLLAERIRANVEALAPFADDAHAVTVSIGIGL--SGTQQDLGRLLGAADEALYR 482

Query: 483 AKHSGRNRI 491
           AK +GRNR+
Sbjct: 483 AKANGRNRV 491