Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 492 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase from Xanthobacter sp. DMC5

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 111/408 (27%), Positives = 166/408 (40%), Gaps = 40/408 (9%)

Query: 16  ARVLSSDCSFD---GVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQ-RA 71
           AR+L+ D + +   G+S DSR I PG LFVA+ G   DG  ++ +  A+GA   L++  A
Sbjct: 14  ARILTPDGAEEPITGLSSDSRRITPGDLFVAIPGTHADGTRFIADAIARGAAAVLMEPTA 73

Query: 72  VADSTLPQLLVA---DTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELL-------- 120
            A    PQ  +A   D R +L    A         +AAITG++GKT+V   L        
Sbjct: 74  PAPILPPQAALAFTLDARRSLSLAAARVYPRQPQTIAAITGTAGKTSVAFFLRQIWERLG 133

Query: 121 --AGVLRTRG---PVHATRGNLNNDFGAPL--TLLELAPEHTAAVIELGASRVGEIAYTV 173
             A  L T G   P  AT G+L       L  TL  LA E     + L AS  G     +
Sbjct: 134 HRAAYLGTIGLVKPNGATYGSLTTPDPVELHATLDALAGEGVTH-MALEASSHGLDQKRL 192

Query: 174 ALTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEI---LEGLDASGIAVLNLDDKAFETWR 230
              +       N G  H+      +    AK  +   +  LDA+ +AV +    A     
Sbjct: 193 DGVRLSAGGFTNLGRDHLDYHPTMDAYFRAKLRLFTEVMPLDAAAVAVTSAPFAATALAW 252

Query: 231 VRAAGRKVLTFAVLNAAADFHASNITV-DARGCPSFTLHTPQGNEHVQLNLLGNHNVANA 289
               G ++L         +  A  I +  A G P+             + L+G   + NA
Sbjct: 253 AHTRGLRLLPI------GEGRADGIDIAAATGSPAGQKVMFADGTSAVVPLVGRFQLDNA 306

Query: 290 LAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSICAAIDL 349
           L AA  A A G         L  ++ V GR + ++  +  R +   Y     ++   +D 
Sbjct: 307 LLAAGLAIACGADRTEAFAALAHLKGVPGR-LERIGDDPRRPVFVDYAHKPEALATVLDT 365

Query: 350 LK-SFEGRKVLVLGDIAELGDWAEQSHREV-GAYAAGKVDALYAVGPN 395
           L+ +  GR V+V+G     G   ++  R + GA AA K D +     N
Sbjct: 366 LRAAIPGRLVVVVG----CGGDRDRGKRPIMGAIAAMKADTVIVTDDN 409