Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase from Pseudomonas simiae WCS417

 Score = 84.7 bits (208), Expect = 6e-21
 Identities = 81/313 (25%), Positives = 135/313 (43%), Gaps = 24/313 (7%)

Query: 28  VSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVADSTLP--QLLVADT 85
           +S+DSRN++ G LF+A+ G +FDG  ++ +   +GA  A+       + LP   + +   
Sbjct: 21  LSLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGA-AAVAYEVEGATVLPITDVPLIPV 79

Query: 86  RLALGQLGALNRAAFTNP-----VAAITGSSGKTTVKELLAGVLRTRGPVHATRGNLNND 140
           +    QL  +    + +P     +  +TG++GKT+V +L+A  L   G      G L   
Sbjct: 80  KGLAAQLSDIAGRFYGDPSRQVNLIGVTGTNGKTSVTQLIAQALDLLGQHCGIVGTLGTG 139

Query: 141 F-GAPLTLLELAPEHTAA-------------VIELGASRVGEIAYTVALTKPHVVVINNA 186
           F GA  + L   P   A               + +  S  G     VA     V V+ N 
Sbjct: 140 FYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLHQGRVAALAFDVAVMTNL 199

Query: 187 GTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAAGRKVLTFAVLNA 246
              H+   G  E     K ++    D     V+NLDD             +++++++ +A
Sbjct: 200 SRDHLDYHGTMEAYAAEKAKLFAWNDLK-CRVVNLDDAFGRQLAAEDRESRLISYSLEDA 258

Query: 247 AADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYALGVSLFGI 306
           +A  +      +  G  + TL TPQG  H++ +LLG  N++N LAA  A   L  +L  I
Sbjct: 259 SAYLYCREAQFNDEGVRA-TLVTPQGEHHLRSSLLGRFNLSNTLAAVGALLGLEYALDEI 317

Query: 307 ATGLGAVQPVKGR 319
              L  ++   GR
Sbjct: 318 LRVLPKLEGPVGR 330