Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 1586 a.a., FIG00732904: hypothetical protein from Variovorax sp. SCN45

 Score = 90.1 bits (222), Expect = 5e-22
 Identities = 100/361 (27%), Positives = 151/361 (41%), Gaps = 37/361 (10%)

Query: 47   PRFDGHDYLNEVAA--KGAVGALVQRAVA--DSTLPQLLVADTRLALGQLGALNRAAFTN 102
            PR D  D   E+        GA+V   V   D+  P L V D   A+  LGA  RA +  
Sbjct: 1162 PRADNWDRHLELPGLQHALAGAVVAHEVEGLDAAFPLLQVQDPIAAMLALGAAARARYKG 1221

Query: 103  PVAAITGSSGKTTVKELLAGVLRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELG 162
             +  +TG+ GK++   +L  +L  R  VH T  N N+  G P  L  LA +    ++E+ 
Sbjct: 1222 LLVGVTGTVGKSSTIAMLRDLLPERARVHTTIDNYNSRVGVPAMLANLAADTDVCILEMA 1281

Query: 163  ASRVGEIAYTVAL-TKPHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNL 221
             S +      ++L  +PHV VI   G +   +    E   E K  I  GL+  G+A++  
Sbjct: 1282 QSGLWMERGPISLKARPHVAVITEIGLSQTRQASTLELTAEYKSRIFLGLEPGGVAIVP- 1340

Query: 222  DDKAFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLL 281
            D        V+AA R      V+    +   +NI +        T   P G   V++ + 
Sbjct: 1341 DHIPCLQQVVQAAARTAGAIWVVGTGPE---ANIRI------VDTQPEPGGGCRVRIAMA 1391

Query: 282  GN--------HN---VANALAAAAAAYALGVSLFGIATGLGAVQ-PVKGRTVAQLATNG- 328
            G         H+   V N+  A AA  A+G         +  V+ P     V  L T   
Sbjct: 1392 GRTVAYSFPLHSAGLVRNSALAFAALVAMGFDAEDACARMPHVRLPASVMQVHPLRTQAG 1451

Query: 329  --MRVIDDTYNANQSSICAAIDLLKSFEG-------RKVLVLGDIAELGDWAEQSHREVG 379
                +IDD++NA   S+  A++ ++ F+        RK+ VLG I  L   AE  HR + 
Sbjct: 1452 VQATLIDDSWNAEVMSMRNAMEFVRGFQRAAQGPVVRKIGVLGRIVNLDKDAEAMHRSLA 1511

Query: 380  A 380
            A
Sbjct: 1512 A 1512



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 118 ELLAGVLRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVALTK 177
           E+LA +      + AT  N + D+GA   L +      A +   G  R  E A+  A  +
Sbjct: 642 EMLAVLTEAGIGMVATANNHSGDYGAEALLEQQTHLDAAGIAHAGTGRTLEAAWRPAFRR 701

Query: 178 PHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAAGR 236
                   AG   V  F     +   +       + +G A L LDD A   W    A R
Sbjct: 702 --------AGGVRVALF----SLDATQQRFAASAERAGAAWLPLDDPA--AWTAELAPR 746