Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

 Score = 67.8 bits (164), Expect = 8e-16
 Identities = 91/350 (26%), Positives = 133/350 (38%), Gaps = 77/350 (22%)

Query: 31  DSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVADSTLPQLLVADTRLA-- 88
           DSR +  G +FVA  G   DG  ++    A+GA   LV+    +   P     D R+   
Sbjct: 26  DSRAVGAGDIFVAWPGAATDGRKHVASALAQGAAVCLVEH---EGVEPFGFDGDERIVSY 82

Query: 89  ---LGQLGALNRAAFTNP-----VAAITGSSGKTTVKELLA---GVLRTRGPVHATR--G 135
                  G +  A + NP     V A+TG++GKT+    LA     LR  G V   +  G
Sbjct: 83  PGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRVMKPDG 142

Query: 136 NLNNDFGAPLTLL-----ELAPEHT----------------AAVIELG-------ASRVG 167
            +  D  +P  ++      + PE T                 +++E G       AS +G
Sbjct: 143 TMQRDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVMMQRELRSLVERGFGACAIEASSIG 202

Query: 168 EIAYTVALTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEILE--GLDASGIAVLNLDDK- 224
                +   +  V V  N    H+   G  +   +AK E+    GL A   AV+N+DD  
Sbjct: 203 IAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPGLRA---AVINIDDTH 259

Query: 225 --------------AFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCP-SFTLHT 269
                         A + W V A G+           A   A +I  DA+G   S   H 
Sbjct: 260 GASLCANLIDAGIGALDVWTVSAGGK----------PARLVARDIGYDAQGLQFSVAEHG 309

Query: 270 PQGNEHVQLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQPVKGR 319
               E +   L+G +NVAN L       ALG++L   A     +  V GR
Sbjct: 310 TAAVERLSTGLIGQYNVANLLGVLGTLRALGLTLAQAAAACANLTSVPGR 359