Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 482 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase (EC 6.3.2.10) from Variovorax sp. SCN45

 Score =  261 bits (667), Expect = 4e-74
 Identities = 172/444 (38%), Positives = 245/444 (55%), Gaps = 26/444 (5%)

Query: 28  VSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVADSTLPQLLVADTRL 87
           V  D+R +  G LFVAL G RFD +++L E   +GAV A+    +  + L  L V D+ L
Sbjct: 34  VHTDTRTLAAGDLFVALKGERFDANEFLAEAKKQGAVAAIAHHGLEAAGLAGLEVPDSLL 93

Query: 88  ALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAGVL----RTRG-PVHATRGNLNNDFG 142
           ALG LGA  RA FT P+ A+TGS+GKTTV +++A VL      RG    AT GN NN+ G
Sbjct: 94  ALGALGAGWRAQFTLPLIAVTGSNGKTTVTQMIAAVLFAARADRGESALATAGNFNNEIG 153

Query: 143 APLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPHVVVINNAGTAHVGEFGGPEKIVE 202
            PLTLL L  +H  AV+ELG +  GEIA   A+++P + ++NNA   H       E +  
Sbjct: 154 VPLTLLRLRAQHQRAVLELGMNHPGEIARLAAMSRPTIALVNNAQREHQEFMATVEAVAV 213

Query: 203 AKGEILEGLDASGIAVLNLDDKAFETWRVRA---AGRKVLTFAVLNAAADFHASNITVDA 259
               +   L   G AV    D     W   A     R+ +TF       +   ++I++D 
Sbjct: 214 ENAAVFAVLPDDGTAVFPYGDAFTSLWTDMAHAGGSRRCMTF------GEHQDADISLDG 267

Query: 260 ----RGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQP 315
               +G  +  + TP G+   +L++ G HNV NALAA A A A GVS   IA GL A +P
Sbjct: 268 AEWKQGAWAVRIRTPIGSFDARLHIAGRHNVVNALAATACALAAGVSTDIIAAGLSAFEP 327

Query: 316 VKGRTVAQ--LATNGMRV--IDDTYNANQSSICAAIDLLKSFEGRKVLVLGDIAELGDWA 371
           VKGR+ A   +  +G  V  +DD+YNAN  S+ AAID+L +  G ++LVLGD+ E+G+ +
Sbjct: 328 VKGRSRASEIVLADGRAVTLVDDSYNANPDSVIAAIDVLAALPGPRLLVLGDMGEVGERS 387

Query: 372 EQSHREVGAYAAGK-VDALYAVGPNMAHAVSVFGPGA--RHFVTQAELIQALTAAEHDKH 428
            + H EVG +A  + ++A+Y  G   AH V+ F   A  RHF  + + + A   A     
Sbjct: 388 PEFHAEVGDWARQRGIEAVYTFGNATAHTVAAFRGDADGRHF-NEFDALGAAVLARLPHV 446

Query: 429 TTILIKGSRSAVMENVVAALCGSS 452
            ++L+KGSRS  ME +V A+   +
Sbjct: 447 GSVLVKGSRSMKMERMVQAIAAQA 470