Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 452 a.a., UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase from Escherichia coli BL21

 Score =  342 bits (878), Expect = 1e-98
 Identities = 205/453 (45%), Positives = 277/453 (61%), Gaps = 7/453 (1%)

Query: 4   AMKFSELTQALSARVLSSDCSFDGVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGA 63
           ++  S+LT  L+  +  +D + D V+ D+R + PG LFVAL G RFD HD+ ++  A GA
Sbjct: 3   SVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 64  VGALVQRAVADSTLPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAGV 123
              LV R + D  LPQL+V DTRLA G+L A  R      V A+TGSSGKT+VKE+ A +
Sbjct: 63  GALLVSRPL-DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAI 121

Query: 124 LRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPHVVVI 183
           L   G    T GNLNND G P+TLL L PE+  AVIELGA+  GEIA+TV+LT+P   ++
Sbjct: 122 LSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALV 181

Query: 184 NNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAAGRKVLTFAV 243
           NN   AH+  FG    + +AKGEI  GL  +GIA++N D+  +  W+     RKV  F+ 
Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSP 241

Query: 244 LNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYALGVSL 303
             A +DF A+NI V + G   FTL TP G+  V L L G HN+ANALAAAA + ++G +L
Sbjct: 242 NAANSDFTATNIHVTSHG-TEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATL 300

Query: 304 FGIATGLGAVQPVKGRTV-AQLATNGMRVIDDTYNANQSSICAAIDLLKSFEGRKVLVLG 362
             I  GL  ++ V GR    QLA N + ++DD+YNAN  S+ AA+ +L    G +VLV+G
Sbjct: 301 DAIKAGLANLKAVPGRLFPIQLAENQL-LLDDSYNANVGSMTAAVQVLAEMPGYRVLVVG 359

Query: 363 DIAELGDWAEQSHREVG-AYAAGKVDALYAVGPNMAHAVSVFGPGARHFVTQAELIQALT 421
           D+AELG  +E  H +VG A  A  +D + +VG   +HA+S       HF  +  LI  L 
Sbjct: 360 DMAELGAESEACHVQVGEAAKAAGIDRVLSVG-KQSHAISTASGVGEHFADKTALITRLK 418

Query: 422 AAEHDKHT-TILIKGSRSAVMENVVAALCGSST 453
           +   ++   TIL+KGSRSA ME VV AL  + T
Sbjct: 419 SLIAEQQVITILVKGSRSAAMEEVVRALQENGT 451