Pairwise Alignments

Query, 560 a.a., long-chain fatty acid--CoA ligase from Pseudomonas simiae WCS417

Subject, 547 a.a., 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type from Variovorax sp. SCN45

 Score =  341 bits (875), Expect = 4e-98
 Identities = 203/539 (37%), Positives = 298/539 (55%), Gaps = 23/539 (4%)

Query: 17  PLLIKRLLMSGARYEKTREIVYR----DKLRYTYPTLIERVARLANVLTEAGVKAGDTVA 72
           PLLI  L+    R+    EIV R    D  R T+  +  R  ++AN L    +   D VA
Sbjct: 9   PLLISSLIEFAERHNGDGEIVSRRVEGDIHRTTWGGIASRARQVANALDGEQLLFSDRVA 68

Query: 73  VMDWDSHRYLECMFAIPMIGAVIHTINVRLSPEQILYTMNHAEDRFVLVNSEFVGLYQAI 132
            + W+ +R+LE  + +   G V+HTIN RL P+QI +  NHAED+ +  +  F+ L QA+
Sbjct: 69  TLAWNGYRHLELYYGVSGSGRVLHTINPRLHPDQIAWIANHAEDQILCFDLSFLPLVQAV 128

Query: 133 AGHLTTVDKTLLLTDGDSKTAE--LPNLVGEYESLLAAASPKYDFQDFDENSVATTFYTT 190
                 + K + L D D   A+  +PNLV  YE+ L   S  YD+  FDENS ++  YT+
Sbjct: 129 HARCPMIRKWVALCDADKLPADSGVPNLVS-YETWLGQQSTDYDWPTFDENSASSMCYTS 187

Query: 191 GTTGNPKGVYFTHRQLVLHTIGVATIMGSVDSVRLLGTNDVYMPITPMFHVHAWGLPYVA 250
           GTTGNPK   ++HR  +LH    A     +  V  +   D  +P+ PMFHV+AWG+PY A
Sbjct: 188 GTTGNPKAALYSHRSTMLHAYAAA-----LPDVMRISAQDSVLPVVPMFHVNAWGIPYSA 242

Query: 251 TMLGLKQVYPG-RYDPEYLVELWRKEKVTFSHCVPTILQMVLNAKAAQGVDFGGW-KIVI 308
            ++G K V+PG   D + + EL   E VTF+  VPT+ QM+L      G+ F    + VI
Sbjct: 243 ALVGCKLVFPGPSLDGKSVYELIESEGVTFAAGVPTVWQMMLGHMQTNGLKFSKLNRTVI 302

Query: 309 GGSALNRTLYEAAKAR-GIQLTAAYGMSETGPLVSCAHLNEELMAGTEDERITYRIKAGV 367
           GGSA    +  A + +  +++  A+GM+E  PL +   L  + ++   D ++  R+K G 
Sbjct: 303 GGSACPPAMITAFQEKYNVEVLHAWGMTEMSPLGTLCTLKNKHLSLPADAQLQIRMKQGR 362

Query: 368 PGPLVEAAIMDAEGNFLPADGESQGELVLRAPWLTEGYYNEPQKG---AELWAGGWMHTG 424
               V+  I+D +GN LP DG++ G+L+++ PW+ + Y+         A+    GW  TG
Sbjct: 363 AIFGVDMKIVDGDGNELPWDGKAYGDLLVKGPWVVKEYFKGEGGDPLIADAQGRGWFPTG 422

Query: 425 DVATLDAFGVIDIRDRIKDVIKTGGEWISSLALEDLVSRHPAVREVAVVGIADPQWGERP 484
           DVAT+DA G + I DR KDVIK+GGEWISS+ +E++   HPAV   A +G+  P+W ERP
Sbjct: 423 DVATIDADGYLQITDRSKDVIKSGGEWISSIDIENIAVAHPAVAMAACIGVFHPKWDERP 482

Query: 485 FALLVVRDGHVIGARELKEHLKPFVELGHLSKWAIPSQIAVVTEIPKTSVGKLDKKRIR 543
              +V +     GA   +E L  F E G  +KW IP  +  V  IP  + GK+ K R+R
Sbjct: 483 IIAVVKKP----GAEVTREELLKFYE-GKTAKWQIPDDVVFVEAIPLGATGKILKTRLR 536