Pairwise Alignments

Query, 448 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  299 bits (765), Expect = 1e-85
 Identities = 187/452 (41%), Positives = 261/452 (57%), Gaps = 19/452 (4%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYTVATANSAAQADALMQRQVFDLCFLDLRLGEDNGLDV 70
           IL+VDDE  +       L      V  A +   A  +++++  DL   D R+   +G  +
Sbjct: 5   ILVVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPAL 64

Query: 71  LAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQL- 129
           LA+++++ P + V+++TA+S V  AV +++ GA DY+ KP   D+L +  AK L+ R + 
Sbjct: 65  LAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDIM 124

Query: 130 --SARLEALEGEVRQPKDGLDSHSPSMMVVLETARQVAGTDANILILGESGTGKGELARA 187
             +ARL A   E  Q  D L   SP+   VL+    V  + A IL+ GESGTGK  +ARA
Sbjct: 125 RDNARLRAELDEHAQ-FDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARA 183

Query: 188 IHGWSKRSKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDE 247
           IH    R+ K  V +NC ++   L+ESE+FGH +GAFTGA    +GR  QAD GTLFLDE
Sbjct: 184 IHKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDE 243

Query: 248 IGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYR 307
           +GD PL LQ K+LR +Q++  E VGDP  R+ DVR++AATN NL D V +  FREDL YR
Sbjct: 244 VGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLYYR 303

Query: 308 LNVITLHLPPLRERSEDILTLADRFLARFVKEYARPARGFSDEAREALLNYRWPGNIREL 367
           LNV  + LP LRER EDI  LA  F         +   GFS EA +A+  Y WPGNIREL
Sbjct: 304 LNVFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIREL 363

Query: 368 RNVVERASIICPQ---EKVEITHLGMAEQPG--------NNAPRIGAAL--SLDQLEKAH 414
           +N VERA+I+      E +++     A +P         ++ P I   L  +L ++EKA+
Sbjct: 364 QNCVERATIVAASPVIEDIDLPGYLFASKPNQGDVTAILSDGPGIPQDLDAALAEVEKAY 423

Query: 415 IGAVLATSDTLDQAART-LGI-DASTLYRKRK 444
           I A L  S+ +  AA   +GI + S  YR +K
Sbjct: 424 ILAALQESNGVQAAAAAKIGISERSFWYRLKK 455