Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score =  284 bits (726), Expect = 6e-81
 Identities = 189/511 (36%), Positives = 276/511 (54%), Gaps = 37/511 (7%)

Query: 3   PSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNADPL 62
           P L +R  Q L MTPQLQQAI+LL LS L+++  +   LE NP+LE Q   DD       
Sbjct: 5   PRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLE-QGAADDGGREGSG 63

Query: 63  ADNIEQKPNSDVQEPSYQ-ETAPTVDNLEEGDWNERIPNEL-----------PVDTAWED 110
            D        +V+ P+   ET  + D + +G      P ++           P D     
Sbjct: 64  VDR-------EVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAG 116

Query: 111 VYQTSASSLP--SNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCIN 168
               S   L   S   +  DF +  +   SLQ HL+ Q   + +S  D LIA  LI  I+
Sbjct: 117 SGSGSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQAR-STLSGMDLLIATQLIGQIS 175

Query: 169 NQGYLDETLEEILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPA 228
             GYL+  L +        L + L  +EAVL  I  F+P G+GAR+L+ECL LQ ++   
Sbjct: 176 EAGYLEANLLQTAHG----LGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANR 231

Query: 229 KTAWLTEAQRLVTDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSE 288
               +   QRL+ + +DLL      QL R   + E+DL  +I  ++  +P+PG +  S  
Sbjct: 232 YDPCI---QRLLAN-LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDS 287

Query: 289 AEYVVPDVIVRKDNERWLVELNQESVPRLRVNPQYAGFVRRA---DTSADNTFMRNQLQE 345
           A  V PD+ V +  E W +E+N  ++PR+ VN  Y  +V  A      A   ++ + L  
Sbjct: 288 ATPVTPDLFVSRTREGWGIEVNSATLPRVLVNRTY--YVELAGGPQDKASKAWLADCLAS 345

Query: 346 ARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVT 405
           A W +K+L  R +T++KVA++IV  Q  F   G   +KPL L  +A+A+ MHEST+SRVT
Sbjct: 346 ANWLVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVT 405

Query: 406 TQKFMHTPRGIYELKYFFSSHVSTSEG-GECSSTAIRAIIKKLVAAENQKKPLSDSKIAG 464
           + K++  PRG+YELKYFF+S V+ ++G G  S+ A+++ IK L+ AE     LSD  +  
Sbjct: 406 SNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVD 465

Query: 465 LLEAQGIQVARRTVAKYRESLGIAPSSERKR 495
           LL A+G+ +ARRTVAKYRES+GI  S +R+R
Sbjct: 466 LLRAKGMDIARRTVAKYRESMGIGSSVQRRR 496