Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  899 bits (2324), Expect = 0.0
 Identities = 448/497 (90%), Positives = 479/497 (96%)

Query: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD 60
           MKPSLVL+MGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQE+G+DFDN+D
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60

Query: 61  PLADNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLP 120
           P+ADN E KP ++VQ+ S+QE+  + DNLE+G+W+ERIPNELPVDTAWED+YQTSASSLP
Sbjct: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP 120

Query: 121 SNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI 180
           SNDDDEWDFTTRTS GESLQSHLLWQLNLAPMSDTDRLIAVTLID IN QGYL++TLEEI
Sbjct: 121 SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEI 180

Query: 181 LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTAWLTEAQRLV 240
              FDPELDIELDE+EAVLHRIQQFEPAG+GAR L ECLLLQLRQLPA T W+TEA+RLV
Sbjct: 181 CAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRLV 240

Query: 241 TDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK 300
           TD+IDLLGSRDYSQLMRRMK+KED+LRQVIELVQSLNPRPGSQIESSE EYVVPDVIVRK
Sbjct: 241 TDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRK 300

Query: 301 DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL 360
           D++RWLVELNQE++PRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
Sbjct: 301 DSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL 360

Query: 361 MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK 420
           MKVATQIVEHQRGFL++GDEAMKPLVLHDIAEAVGMHESTISRVTTQK+MHTPRGIYELK
Sbjct: 361 MKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELK 420

Query: 421 YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK 480
           YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
Sbjct: 421 YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK 480

Query: 481 YRESLGIAPSSERKRLM 497
           YRESLGIAPSSERKRLM
Sbjct: 481 YRESLGIAPSSERKRLM 497