Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 477 a.a., RNA polymerase sigma-54 factor RpoN from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  528 bits (1359), Expect = e-154
 Identities = 267/499 (53%), Positives = 361/499 (72%), Gaps = 24/499 (4%)

Query: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD 60
           MK  L LR+ QQL MTPQLQQAIRLLQLSTL+LQQE+Q+ALE+NP+LE+ +  D+ D   
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDT-- 58

Query: 61  PLADNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLP 120
                         Q+P   +   T D LE+    + +P ELP+D +W+++Y     S P
Sbjct: 59  --------------QQPQDNDPLDTADALEQ----KEMPEELPLDASWDEIYTAGTPSGP 100

Query: 121 SND--DDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLE 178
           S D  DDE     +    +SLQ +L+WQ+ L P SDTDR IA +++D +++ GYL  +L+
Sbjct: 101 SGDYIDDELP-VYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLD 159

Query: 179 EILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTAWLTEAQR 238
           EI E+   +++++LDE+EAVL RIQ+F+P G+ A+ L +CLL+QL Q    T WL EA+ 
Sbjct: 160 EIRESMG-DVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARL 218

Query: 239 LVTDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIV 298
           ++ D++DLL + D+  LMR  +LKE+ L++ + L+QSL+PRPG  I++ E EYV+PDV+V
Sbjct: 219 IICDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLV 278

Query: 299 RKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNE 358
           RK N RW VELN +S+PRL++N  YA     A   AD+ F+R+ LQ+A+W IKSL+SRN+
Sbjct: 279 RKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRND 338

Query: 359 TLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYE 418
           TL++V+  IVE Q+ F E G+E MKP+VL DIA+AV MHESTISRVTTQK++H+PRGI+E
Sbjct: 339 TLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFE 398

Query: 419 LKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTV 478
           LKYFFSSHV+T  GGE SSTAIRA++KKL+AAEN  KPLSDSK+  LL  QGI VARRTV
Sbjct: 399 LKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTV 458

Query: 479 AKYRESLGIAPSSERKRLM 497
           AKYRESL I PS++RK+L+
Sbjct: 459 AKYRESLSIPPSNQRKQLV 477