Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 477 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Enterobacter asburiae PDN3

 Score =  526 bits (1355), Expect = e-154
 Identities = 267/499 (53%), Positives = 364/499 (72%), Gaps = 24/499 (4%)

Query: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD 60
           MK  L LR+ QQL MTPQLQQAIRLLQLSTL+LQQE+Q+AL+SNP+LE+ +  D+ D   
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDT-- 58

Query: 61  PLADNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLP 120
                         Q+    E   T D LE+    + +P+ELP+D +W+++Y     S  
Sbjct: 59  --------------QQSQDTEALDTADALEQ----KEMPDELPLDASWDEIYTAGTPSGT 100

Query: 121 SND--DDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLE 178
             D  DDE     +    +SLQ +L+WQ+ L P SDTDR IA +++D +++ GYL  TL+
Sbjct: 101 RADYQDDELP-VYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLD 159

Query: 179 EILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTAWLTEAQR 238
           +ILE+   + +IEL+E+EAVL RIQ+F+P G+ A+ L +CLL+QL Q   +T W+ EA+ 
Sbjct: 160 DILESMGDD-EIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWIDEARL 218

Query: 239 LVTDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIV 298
           +++D++DLL + D+  LMR  +LKE+ L++ + L+QSL+PRPG  I++SE EYV+PDV+V
Sbjct: 219 IISDHLDLLANHDFRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLV 278

Query: 299 RKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNE 358
           RK N+ W+VELN +S+PRL++N QYA     A   +DN ++R+ LQEARW IKSL+SRN+
Sbjct: 279 RKHNDHWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIRSNLQEARWLIKSLESRND 338

Query: 359 TLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYE 418
           TL++V+  IVE Q+ F E G+E MKP+VL DIA+AV MHESTISRVTTQK++H+PRGI+E
Sbjct: 339 TLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFE 398

Query: 419 LKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTV 478
           LKYFFSSHV+T  GGE SSTAIRA++KKL+AAEN  KPLSDSK+  +L  QGI VARRTV
Sbjct: 399 LKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTV 458

Query: 479 AKYRESLGIAPSSERKRLM 497
           AKYRESL I PS++RK+L+
Sbjct: 459 AKYRESLSIPPSNQRKQLV 477