Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 483 a.a., RNA polymerase sigma-54 factor from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  288 bits (738), Expect = 2e-82
 Identities = 179/506 (35%), Positives = 286/506 (56%), Gaps = 42/506 (8%)

Query: 7   LRMGQQLT--MTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLER-QEEGDDFDNADPLA 63
           L + Q L+  ++PQ  Q I+LLQ+ T +L+  ++E LE NP LE  +EEGDD    + LA
Sbjct: 4   LNLNQVLSQKLSPQQIQFIKLLQVPTAELEARVEEELEINPALEEGKEEGDDAQE-EVLA 62

Query: 64  DNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLPSND 123
           DN ++                   N E+ D N  + + L  D     + Q   +  P  +
Sbjct: 63  DNYDE------------------GNKEDKDIN--LEDYLSDDYGGYKM-QGDGNYTPDEE 101

Query: 124 DDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEILE- 182
           D E   ++    G SL   LL QL+   + +  +LI   LI  I + GY+   LE I+  
Sbjct: 102 DREMPLSS----GTSLHEQLLSQLSFLRLDEHQKLIGKQLIGSIESDGYIRRDLEAIIND 157

Query: 183 -AFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQL-RQLPAKTAWLTEAQRLV 240
            AF   ++ +LDE+E VL +IQ F+PAGI AR+L ECL++QL R+   +   + +A ++V
Sbjct: 158 LAFSQNVETDLDEVEEVLRKIQNFDPAGIAARSLQECLIIQLERKEHQEDEVVQKAIKVV 217

Query: 241 TDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIES-SEAEYVVPDVIVR 299
           TD  D    + Y +++++  L E+DL++VI+++  LNP+PG   +     +Y++PD ++ 
Sbjct: 218 TDCFDEFTKKHYDKILKKCNLSEEDLKEVIQMITRLNPKPGGGSDGLMRTQYIIPDFLLN 277

Query: 300 KDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADN--------TFMRNQLQEARWFIK 351
             N +  + LN  + P LRV+  Y+      + S           +F++ +L  A+WFI 
Sbjct: 278 VVNGKPEITLNSRNAPELRVSRSYSEMFEAYEKSDKKDKKLKDTVSFVKQKLDAAKWFID 337

Query: 352 SLQSRNETLMKVATQIVEHQRGFLEYGDEA-MKPLVLHDIAEAVGMHESTISRVTTQKFM 410
           +++ R +TL+K    I+++Q+ F E GDE  +KP++L DIAE + M  ST+SRV   K +
Sbjct: 338 AIKQRQQTLLKTMHAILDYQKEFFEEGDETKLKPMILKDIAERIDMDISTVSRVANSKAI 397

Query: 411 HTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQG 470
            T  G++ LKYFFS  +ST  G + S+  ++++++KLV  E+++KPLSD K+  LL  +G
Sbjct: 398 QTEFGVFPLKYFFSEGISTEGGEDVSNREVKSVLQKLVDNEDKRKPLSDDKLVKLLNEKG 457

Query: 471 IQVARRTVAKYRESLGIAPSSERKRL 496
             +ARRTVAKYRE L I  +  RK L
Sbjct: 458 YNIARRTVAKYREQLQIPVARLRKEL 483