Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

 Score =  301 bits (770), Expect = 5e-86
 Identities = 190/517 (36%), Positives = 293/517 (56%), Gaps = 38/517 (7%)

Query: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD 60
           +  SL+LR  Q L MTPQL Q+I+LLQ++  +L Q I + +E NP+LE      D  +  
Sbjct: 3   LSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDT 62

Query: 61  PLADNIEQKPNSDVQEPSYQETAPTVDNLEEGDW-NERIPN-ELPVDTAWEDVYQTSAS- 117
           P+  +++   +++  + + + T       +  DW  ER  N    +DT++E+V+      
Sbjct: 63  PV--DVDNFGDAEASDAAVRVTP------DSDDWYGERAANLGEQLDTSFENVFPDDGEP 114

Query: 118 -------------SLPSNDDDE-WDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTL 163
                        S+P  +  E +D     +  +SL  HL  QL LA  +  DR+IA  L
Sbjct: 115 RKADAPELASQWKSMPGQESGESYDLDDFVAARQSLSDHLNQQLPLAISAAEDRMIADAL 174

Query: 164 IDCINNQGYLD-ETLEEILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQ 222
           I  ++  GY+  + ++++ E     L      +E VL  +Q F+P GI +R+LSECL  Q
Sbjct: 175 IGQLDETGYIAADAVDDVAE----RLGATPSAVEYVLKTLQGFDPPGIFSRSLSECLATQ 230

Query: 223 LRQLPAKTAWLTEAQRLVTDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGS 282
           L Q       L  A R   D ++LL  RD++ L +   + E+DL  ++  +++LNPRPG+
Sbjct: 231 LAQKDR----LDPAMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGA 286

Query: 283 QIESSEAEYVVPDVIVRKDNER-WLVELNQESVPRLRVNPQYAGFV--RRADTSADNTFM 339
             +S  +E +VPD+IVR  +   WLVE+N +++PR+ +N  Y   V   +A    D  F+
Sbjct: 287 GYDSMVSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFL 346

Query: 340 RNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHES 399
              +Q A W  +SL  R  T+MKVA++IV  Q  FL  G + ++PL L  +A+A+ MHES
Sbjct: 347 SECMQTAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHES 406

Query: 400 TISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLS 458
           T+SRVT++K+M TPRG++ELKYFFS  +S  EGG+  S+ A+R  IK ++A E  +  LS
Sbjct: 407 TVSRVTSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLS 466

Query: 459 DSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKR 495
           D  I   L+  GI +ARRTVAKYRE++ I  S +R+R
Sbjct: 467 DDDIVDNLKKTGIDIARRTVAKYREAMNIPSSVQRRR 503