Pairwise Alignments

Query, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 529 a.a., periplasmic dipeptide transport protein from Pseudomonas putida KT2440

 Score =  464 bits (1194), Expect = e-135
 Identities = 238/513 (46%), Positives = 329/513 (64%), Gaps = 2/513 (0%)

Query: 22  AQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGTEVEPGLATSWDI 81
           A  A+ L  CSEASP GFD  QY S T  +A+A+ + NRL +F     +V P LATSW +
Sbjct: 18  AAQAAPLSVCSEASPEGFDVVQYNSLTTTNATADVLMNRLVEFDAAQGKVVPSLATSWTV 77

Query: 82  SQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLDAQSPFRQAYPSESPYFT 141
           S DGL Y F LRD VKFH+T +F P+R  NADDVLF+F R+L     + +  P   P+  
Sbjct: 78  SADGLVYDFTLRDDVKFHSTSYFKPSRKLNADDVLFSFQRMLYPAHAWHKTAPGGYPHAQ 137

Query: 142 DMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQSAEYAAQLLKQGKAEEIN 201
            + L + IK+++    +TVRF L++ DA+F+  L+M FAS+ SAEYA +LLK G  E++N
Sbjct: 138 SLQLGSLIKAIEAPSPNTVRFTLSHPDATFLATLSMGFASIYSAEYADKLLKAGTPEKLN 197

Query: 202 QKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVFAITPDAASRLQKLKAGECQ 261
            +P+GTGPFVF+R+QKD+ +RY AN  Y+  +   +D L+FAIT DA  RLQKLK GECQ
Sbjct: 198 NQPIGTGPFVFQRFQKDAVVRYRANPDYFAGKPA-VDPLIFAITTDANVRLQKLKRGECQ 256

Query: 262 VSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVTHPPLDQLKVRQALDMAIDKPAII 321
           V+  P+P DI    QD NL V     F   F+A N  HPPLD+ +VRQA+++A D+ A +
Sbjct: 257 VALSPKPLDIAEAGQDGNLKVATTPAFMTAFVAINSQHPPLDKPEVRQAINLAFDRQAYL 316

Query: 322 KAVYQSAGQLAQNALPPAQWSYDPTIKDAPYDPTKAKALLKEAGVAPGTTVNLWAMTVQR 381
           KAV++ +   A    PP  WSY   +   P D  KAKALL +AG+A G +  +W      
Sbjct: 317 KAVFEDSAVAANGPYPPNTWSYAKDLPGYPLDLKKAKALLAKAGLAEGFSTTIWTRPSGS 376

Query: 382 ASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNW 441
             NPN  + AQM+Q D  K+GIKA I   EWGE I+RAK GEHD +  GW GDNGDPDN+
Sbjct: 377 LLNPNPSLGAQMLQADLAKIGIKAEIRVIEWGELIRRAKAGEHDLLFMGWAGDNGDPDNF 436

Query: 442 LGVLYSCAAVK-GSNYAKWCNPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPI 500
           L   +SCAAV+ G+N+A++C+   D+L+   + +ND+  R + YQQAQ ++++Q    P+
Sbjct: 437 LSPQFSCAAVESGTNFARFCDSRLDQLISAGRTTNDQSVRSRLYQQAQTLIQQQALWVPL 496

Query: 501 ANSTVFQPLRKEVKDFKISPFGLTPFYGVSLDK 533
           A+ T    LR+ V+ +++SPFG   F  V++ K
Sbjct: 497 AHPTAATLLRQGVEGYQVSPFGRLDFSKVTVTK 529