Pairwise Alignments

Query, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  780 bits (2014), Expect = 0.0
 Identities = 382/536 (71%), Positives = 438/536 (81%), Gaps = 11/536 (2%)

Query: 6   VLSAMFATSLLAVATMGHAADKRSLVFCSEGSPAGFDTAQYTTATDNDA-AEPLYNRLVE 64
           V+  +    LL+ A    AA   +LVFCSEGSPAGFD  QYTT TD DA AE ++NRL +
Sbjct: 6   VIPFLLGAGLLSGAPSAVAAS--NLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQ 63

Query: 65  FEKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRML 124
           FE+G T V+P LATKW++S DG TYTFHLREGVKFH+   FKP+R FNADDVLFTFNRML
Sbjct: 64  FERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRML 123

Query: 125 DPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAIL 184
           D D+PFRKAYPTEFPYF  M ++KNIAKVEK D HTV  TLN VDAAFIQN+AMSFA+I 
Sbjct: 124 DKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQ 183

Query: 185 SAEYAEQLLKAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLIFA 244
           SAEYA+QLLK GK +DINQKPIGTGPFVF +YQKD+QIR+  NK YW P  VK+D LIFA
Sbjct: 184 SAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFA 243

Query: 245 INTDASVRVQKLKAGECQVTLHPRPADVDALKADPNLKLLTKPGFNLGYIAYNVRHK--- 301
           I TDASVR+QKLK  ECQVTL PRPAD++ LKAD NL++  + GFNLGYIAYNV  K   
Sbjct: 244 ITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKG 303

Query: 302 -----PFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSIKDAAYNPE 356
                P  QL+VRQALDMAV+K+ I+ +VYQGAGQLAVNAMPPTQWSYDDSIKDAA++PE
Sbjct: 304 SNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDAAFDPE 363

Query: 357 KAKELLKAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKIVSYEWGEY 416
           KAK+LLK AG+KEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIG+K KIVSYEWGEY
Sbjct: 364 KAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEY 423

Query: 417 IKRTKNGEHDVSLIGWTGDNGDPDNWLGTLYSCDAIGGNNYSMWCDPAYDKLIKQAKVVT 476
           IKR+K GE    LIGW+GDNGDPDNWLGTLY CDA+ GNN+S WC   YD LIKQAK  +
Sbjct: 424 IKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCYKPYDDLIKQAKATS 483

Query: 477 DREQRTVLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFGRNVFSGVSI 532
           D+ +RT LY++AQ +LK+QVPITP+AHSTV QP+SAKV+ FK+SPF  N F GVS+
Sbjct: 484 DQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSFYGVSV 539