Pairwise Alignments

Query, 471 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  166 bits (420), Expect = 1e-45
 Identities = 143/466 (30%), Positives = 208/466 (44%), Gaps = 60/466 (12%)

Query: 15  SITATAYAETTSQDFVPTTLAGTSAQSEAKGFIDGQSLGGTTRNWYSNEMKFRGQKFGYY 74
           S+ A A +  TSQ      LA  SAQ E+KGFI+   L   TR  Y +   FR  + G  
Sbjct: 7   SMIALAVSAGTSQ------LAMASAQDESKGFIEDSKLSVKTRMLYFSR-DFRNNEGGQ- 58

Query: 75  KNAADKAADVKTNVSRRYNWAQGTILNYSSGFTQGTVGVATEVAAYNYIALIDDQKDIAG 134
                         SRR     G +  + SGFTQGTVGV  +  A   + L  D      
Sbjct: 59  --------------SRREETGLGFVGTFESGFTQGTVGVGVD--AIGMLGLKLDSGKGRA 102

Query: 135 GSNRTLAHTYGDAVGQWSKLGLANVKFRVSNTTLTAGRQNFSSGIMDTIGNRALPSSFEG 194
           G+      + G +   +SK G A VKFR+S+T L  G Q  +  +  T  +R LP   +G
Sbjct: 103 GTGLFPTGSDGRSQDDYSKGGGA-VKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQG 161

Query: 195 VSFNSEEFSNLSFQGGVFDRVSPRTEQSLSKFRSEYSSSGVETDKVYTLGFNYQPLKSLK 254
               S E   L+   G F  ++ + + +   F       G++   V  +G  Y    +L 
Sbjct: 162 TLITSNEIEGLTLHAGHFTSLTAQEQTNRDSF-------GLKEANV--VGGTYAFTDNLS 212

Query: 255 TSVFAANVKDFWNQYYFGATHELGDSQVLSLTTGLNYYKTVDEGKKLM-----GEIDNDT 309
           TS++ + V+D+W +YY      L  S    L    N Y T  EG          ++DN  
Sbjct: 213 TSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRA 272

Query: 310 YSLSLGLTHQAHSLTFSYQEVNGNEYFDYLHETNG-IYLANSLT-SDFNGPNEKSFQVAY 367
           +SLS      AH+ T +YQ+V G+  + Y  +  G I+LANS+  SDFN  +EKS+Q  Y
Sbjct: 273 FSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARY 332

Query: 368 AINMAEYGVPGLKFNIYSARGWGIDGTHYRGDNGVKDFAYNGIQAQNGEHHQEYGIGSSY 427
            +N AEYG+PGL F     RG      +  G +  K++              E  +   Y
Sbjct: 333 DLNFAEYGIPGLTFMTRYVRG---SDANVAGTSNGKEW--------------ERDVDIKY 375

Query: 428 AIQSGPLKATTVRATYVTHRASEN--QSDGNLREFRLVTTIPFNIL 471
            +Q GP K  + R    T+R+S+       ++ E RL+   P +IL
Sbjct: 376 VLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421