Pairwise Alignments

Query, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

Subject, 340 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  233 bits (593), Expect = 7e-66
 Identities = 124/317 (39%), Positives = 190/317 (59%), Gaps = 3/317 (0%)

Query: 19  ITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYLDYVGKLAQGDL 78
           + L+TF + +  P DPV  ++G+R   PE + +A +R+GL++P+  Q++ YV   A+GDL
Sbjct: 24  LLLVTFLIGKAAPIDPVLQVVGDR-ASPEAYQEARQRMGLDQPIATQFVRYVADAAKGDL 82

Query: 79  GESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISL 138
           G S  T  +V  +    FPATLEL+   +L   + G+  G++AA +     D  +  + L
Sbjct: 83  GRSTTTGRAVLEDLRQYFPATLELATLGILLGVVFGVPLGMLAAHQHNRWIDQLLRLVGL 142

Query: 139 AGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYD--IEPRTGFMLIDTLLADEPDAFW 196
            GYS+P+FW GL+ ++ F   LGW    GR+D +Y   ++  +  +L+DTL A   +AF 
Sbjct: 143 LGYSVPVFWLGLVGLLIFYARLGWVGGPGRLDDIYQYTVDSWSNLVLVDTLRAGNGEAFR 202

Query: 197 DALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGLSPARVVFVHGLRNA 256
           + L HL+LPA +LG   LA I+RMTR+  LE L ++Y+ TA+ KG S  +V+  H L N 
Sbjct: 203 NGLSHLVLPAALLGYFSLAYISRMTRAFFLEELGKEYVLTARVKGASELQVLVRHVLPNV 262

Query: 257 LIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVIL 316
             P++TV+ L    LL GAVLTET+FSWPGIG ++  A+ + D   V  G LL+    ++
Sbjct: 263 AAPLVTVIALSYAVLLEGAVLTETVFSWPGIGLYVTNALFSADVAAVLGGTLLVGLCFVV 322

Query: 317 VNFVVDILYGFANPRIR 333
           +N   D+L    +PR R
Sbjct: 323 LNTASDVLGYLMDPRAR 339