Pairwise Alignments

Query, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

Subject, 326 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  240 bits (613), Expect = 3e-68
 Identities = 132/336 (39%), Positives = 198/336 (58%), Gaps = 14/336 (4%)

Query: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60
           MF+FI RRL   +     +  + F L + + GDPV  ++G+    P+   +    LGL++
Sbjct: 1   MFAFILRRLAQAVIVMVSVAFIAFMLFQYV-GDPVVFLLGQDAT-PDQVRELRSELGLDR 58

Query: 61  PLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVI 120
           P + Q+  ++    QG+ G SLR    V       FPATLELSM A + A ++G+  GV 
Sbjct: 59  PFFVQFWHFLANAVQGEFGLSLRQGAKVSRLIAERFPATLELSMVAAVLALVVGIPMGVY 118

Query: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTG 180
           AAL+RG+      M +SL G S+P F  G++LI+ F+V+LGW P  GR D+       TG
Sbjct: 119 AALRRGTFMSQVFMTVSLLGVSLPTFLIGILLILLFAVTLGWFPSFGRGDVTQLGWWSTG 178

Query: 181 FMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAK 240
            +         P  +    HH+ LPAI L    L +I R+ R+ MLEVLR DYI+ A+A+
Sbjct: 179 LLT--------PKGW----HHITLPAITLAIFQLTLIMRLVRAEMLEVLRTDYIKFARAR 226

Query: 241 GLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300
           GL+   V F H L+N L+PV+T+ GLQ+G L+A A++TET+F WPG+G   I+A+   D 
Sbjct: 227 GLTNRAVHFGHALKNTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLLFIQAVTFADI 286

Query: 301 PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR 336
           PV+   + LIA + +++N +VD+LY   +PR+R ++
Sbjct: 287 PVMAAYLCLIALIFVVINLIVDLLYFAVDPRLRVEK 322