Pairwise Alignments

Query, 303 a.a., peptide transporter from Pseudomonas simiae WCS417

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  219 bits (558), Expect = 6e-62
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 6   PVSAVDQSLLYPS-----PYKEFWQAFSKNKGAVAGLLFMLLIVFCAIFAPWVAPHNPSE 60
           PV++  Q    P      P  E  + F +N  A+AG+  +L+++  AI  PWV P +P E
Sbjct: 9   PVASASQPAARPPVRVEHPGMEALRMFLRNPAAIAGMAMLLIVLAVAIAGPWVYPADPFE 68

Query: 61  QYRDFLLTPP----AWLEGGQMQFLLGTDELGRDLLSRLIQGSRLSLLIGLSSVVMSLIP 116
             +   LTPP    AWL         G+D LGRD+L+ LI G R +LL+G  + ++S++ 
Sbjct: 69  -IKAAPLTPPFSEDAWL---------GSDYLGRDVLTALIYGGRATLLVGAVAALLSVLI 118

Query: 117 GILLGLFAGFFPRLLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPS 176
           GI LG FAG++   +   +M+L +    LP+LL A+ +V +  P L+   +AI IVS   
Sbjct: 119 GITLGAFAGYYGGKIDAALMKLTEFFQVLPALLFAMVVVTLFSPTLVTVTLAIGIVSWTG 178

Query: 177 YVRLTRAAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAA 236
             RLTRA  M     ++V A R  GAG  R+++  +LPN + PL+V ATL+  +AIL  A
Sbjct: 179 TARLTRAEFMKYRGLEFVRAERAIGAGDARIIWKVILPNALPPLVVSATLAIGAAILFEA 238

Query: 237 ALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALD 296
            L FLGLG  P    WG M+ S+R Y+   WW V+ PG  I ++VLA++L+GDGL DAL+
Sbjct: 239 GLSFLGLG-DPNQMSWGLMIGSSRQYVLSCWWAVAFPGAAIFITVLAVSLIGDGLNDALN 297

Query: 297 PKLK 300
           PKL+
Sbjct: 298 PKLR 301