Pairwise Alignments

Query, 322 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 324 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  285 bits (730), Expect = 8e-82
 Identities = 144/315 (45%), Positives = 210/315 (66%), Gaps = 1/315 (0%)

Query: 1   MSLLEIKNLNVRF-GDKTAVPVVDGLDISVDKGEVLAIVGESGSGKSVTMMALMGLIEHP 59
           MSLL++KNL V F G +  +  +D +   +  GE+L +VGESG+GKS+T  +++GL+E P
Sbjct: 1   MSLLQVKNLVVEFPGRRGTLRALDDVSFEIAPGEILGVVGESGAGKSLTGASIIGLLEPP 60

Query: 60  GIVTADALNFDGKDMLKLSNRQRRQIVGKDLAMVFQDPMTALNPSYTVGFQIEEVLRLHL 119
           G V +  +   G+ +  L + Q R++ G+++  +FQDP+T+LNP Y+VG Q+ E +  HL
Sbjct: 61  GRVASGEILLHGRRIDNLPHDQMRKVRGREIGAIFQDPLTSLNPLYSVGRQLIETITTHL 120

Query: 120 KMSGKQARKRAIELLEKVEIPGAASRMDAYPHQLSGGMSQRVAIAMAIAGEPKLLIADEP 179
            +S  +AR+RAI+LL+   IP A  R+D +PHQ SGGM QRV IA+A+A EP+L++ADEP
Sbjct: 121 PVSHAEARRRAIDLLKDTGIPAAEQRIDHFPHQFSGGMRQRVVIALALAAEPQLIVADEP 180

Query: 180 TTALDVTIQAQIMELLLALQKEQNMGLVLITHDLAVVAETAQRVCVMYAGQAVEVGQVPQ 239
           TTALDV+IQAQI+ LL  + K++   ++LITHD+ V+AET  RV VMYAG+  E+G V Q
Sbjct: 181 TTALDVSIQAQIITLLKTICKQRGAAVMLITHDMGVIAETCDRVAVMYAGRVAEIGPVHQ 240

Query: 240 LFDIPAHPYSEALLKAIPEHSLGATRLATLPGIVPGRYDRPQGCLLSPRCPYVQENCRTQ 299
           + + PAHPY+  L+  IP+ S    RL  + G +P     P GC  +PRC  V + C  +
Sbjct: 241 VINHPAHPYTAGLMACIPDMSQDRERLHQIDGAMPRLNAIPPGCAYNPRCEKVFDRCHIE 300

Query: 300 RPDLDPKTNSLARCF 314
           RPDL     + A C+
Sbjct: 301 RPDLLSAGPTRAACW 315