Pairwise Alignments

Query, 298 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 508 a.a., ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes) from Variovorax sp. SCN45

 Score =  105 bits (263), Expect = 2e-27
 Identities = 91/293 (31%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 1   MKRLTLILSCVLLFAGIAQAAEKPVIRIGARVFTEQTLLAEITSQYLRTKGYDARVTG-G 59
           + RL L+L+   L    A  A    +R+G++ FTE  +LAE+ +Q          V   G
Sbjct: 7   LHRLALLLTLAWLAMAPAAHAADDTLRVGSKRFTESYILAELLAQTAAPHTASPPVVRQG 66

Query: 60  LGSN-LARSAQESGQLDLIWEYTGVSLVAYNHVDEKLDSEQSYARVKELDAKKGLIWLSP 118
           LG+  +   A  SG +DL  EYTG   +A   +  K    +S   +    A  GL    P
Sbjct: 67  LGNTAIVYEALRSGAIDLYAEYTGT--IAQEIL--KGSPAESREAMNAALAPMGLGVAIP 122

Query: 119 SRFSNTYALALPENVAKEFPQINSISDLTHALAEKTKGTRLVALDTEFANRSDGMGGMVK 178
             F++ YALA+    A     + ++SDL      K      + L  EF  R+DG  G+ +
Sbjct: 123 LGFNDGYALAVRAADADRLG-LRTLSDLAKHPELK------LGLSNEFIGRADGWKGLAE 175

Query: 179 LYDMNLTRKNTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKLLEDDKHYFPDYTA 238
            Y    T      +D GL Y A+   Q+ A  +YTTD +++   L++LEDD+ YFP Y A
Sbjct: 176 RYGFKQTPTG---LDHGLAYDAIAAKQIDAIDIYTTDAKIDHLGLRVLEDDRKYFPRYDA 232

Query: 239 APVIRQAYLDQHPTLAAELKPLADLFDDETMRQLNARVDVDHESPSAVAADFL 291
             + +     + P   A LK L    D+  M  +NAR ++      A+A DFL
Sbjct: 233 VVLYKLDLPQRLPEAWAALKTLEGKVDEHAMIAMNARAELQSVPFDAIARDFL 285