Pairwise Alignments

Query, 298 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 303 a.a., ABC transporter, substrate binding protein (proline/glycine/betaine) from Agrobacterium fabrum C58

 Score =  124 bits (310), Expect = 3e-33
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 13/303 (4%)

Query: 1   MKRLTLILSCVLLFAGIAQAAEKPVIRIGARVFTEQTLLAEITSQYLRTKGYDARVTGGL 60
           M RL  +    L  A     A+  V+ + +++ TE  +L  I    L     +      L
Sbjct: 1   MNRLMTLTGAGLALAFSVSIAQAQVV-VSSKIDTEGGVLGNIILAVLNQNKIETTDRIQL 59

Query: 61  GSN-LARSAQESGQLDLIWEYTGVSLVAYNHVDEKL--DSEQSYARVKELDAKKG-LIWL 116
           G+  + R A  +G++D+  EYTG +   ++  D+ L  D+ + Y   K LD     ++WL
Sbjct: 60  GATPVVRKAITAGEIDIYPEYTGNAAFFFSKADDPLWKDAAKGYEEAKTLDYDANKIVWL 119

Query: 117 SPSRFSNTYALALPENVAKEFPQINSISDLTHALAEKTKGTRLVALDTEFANRSDGMGGM 176
           +PS  +NT+A+AL ++VA +   + ++SD    +A    GT ++A  +EF N +  +   
Sbjct: 120 APSPANNTWAIALRKDVADK-NNLKTLSDFGKYVAGG--GTVVLAASSEFVNSAAALPAF 176

Query: 177 VKLYDMNLTRKNTRQMDAG-----LVYTALRNGQVFAGLVYTTDGRLNAFKLKLLEDDKH 231
              Y   +       +  G     +   A +     A +VY TDG +    L +LEDDKH
Sbjct: 177 QTTYGFTMKPDQLITLSGGDTAATIAAAANQTNNANAAMVYGTDGGIAPSGLVVLEDDKH 236

Query: 232 YFPDYTAAPVIRQAYLDQHPTLAAELKPLADLFDDETMRQLNARVDVDHESPSAVAADFL 291
             P Y  AP+IR+  L +HP +   LKP+ +  D  T++ LNARV V  E    VA DFL
Sbjct: 237 VQPVYQPAPIIREEVLKKHPNIEELLKPVFEKLDLATLQDLNARVQVGGEQAKTVAMDFL 296

Query: 292 RQH 294
            ++
Sbjct: 297 TKN 299