Pairwise Alignments

Query, 217 a.a., choline ABC transporter permease from Pseudomonas simiae WCS417

Subject, 247 a.a., putative Glycine betaine/carnitine/choline ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  127 bits (318), Expect = 2e-34
 Identities = 78/196 (39%), Positives = 113/196 (57%), Gaps = 12/196 (6%)

Query: 22  HITLVGIAVILAILIGVPLGILMTRFPTL--AGPLQASATVLLTVPSIALFGLLLPFYSK 79
           H+ LV  ++  A+ +G+P GI ++R   +  A        V  T+P +A+  + L     
Sbjct: 55  HLVLVLASMAAALAVGIPAGIALSRPHRVDKAERFMQFFNVGNTIPPLAVLAIALSIL-- 112

Query: 80  FGQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIA 139
              G+G  PAI A+FL SLLPI+RNTY  L  V   ++EAA GIGMT  Q+L  VELP A
Sbjct: 113 ---GIGAGPAIFALFLASLLPIVRNTYEGLKNVPASLKEAATGIGMTPRQQLWQVELPNA 169

Query: 140 VPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRSDMSMLIVGAVLVSLLAIFA 199
           VP+I+ GVR A+ +N+G   +A  IGA  LG LI   I+ ++   L++GA   +LLA+  
Sbjct: 170 VPIIVGGVRVALALNVGTAPLAFLIGANSLGSLIFPGIALNNQPQLLLGAACTALLALVL 229

Query: 200 DLLL-----QWLQRSL 210
           D  +     +WL+R L
Sbjct: 230 DAAVSFSSRRWLERGL 245