Pairwise Alignments

Query, 331 a.a., transcriptional regulator from Pseudomonas simiae WCS417

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  107 bits (266), Expect = 6e-28
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 13/311 (4%)

Query: 3   LSDIARLAGVSVTTASYVINGKAEQQRISNATVERVRAVVEAHGFTPNPQAAGLRSRHTR 62
           + D+A LAG+S TT S+V+N   + + +S     +V A +    + P+  A  L++R T 
Sbjct: 4   IKDVAALAGISYTTVSHVLN---KTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60

Query: 63  TLGFILPDLENPSYARIAKLLEQGARARGYQLLIASSDDDADSERQLLQLFRARRCDALF 122
           T+G ++P+  NP +A +A+ +E      GY +++ +SDD+   +R  L++   +R D L 
Sbjct: 61  TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120

Query: 123 VASCLPASDDSYRELQAKGLPVIAIDRVMGADQFCSVVSDDRQACLQLTSSLLQPLPKQI 182
           VAS +   DD  + L +   P++ +DR +       V  D  Q     T  LL+   + +
Sbjct: 121 VAS-VGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDV 179

Query: 183 VLIGARPELSISQERAAGFREALEGFTGEV---IVEHGEAFSRDCGRQLMEQLLQQLGHL 239
             IG   E  ++Q R +GFR A+      V    V H + F+   G     Q+L+  G  
Sbjct: 180 AYIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCD-FTSPGGHAAAAQVLE--GKR 236

Query: 240 PDALVTTSYVLLQGVFDALHDFPLKSRPLRLGTFG--DTQLLDFLPLPVNAMAQQHQLIA 297
           P A+   + ++  GV  A  +  + S P  L   G  D +L  ++   +  + Q  + + 
Sbjct: 237 PSAIFAGNDMIGFGVLRAAAERNI-SVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELG 295

Query: 298 ETALRLALVAV 308
           E+A  L L  +
Sbjct: 296 ESAASLLLTRI 306