Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 452 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Sphingobium sp. HT1-2

 Score =  119 bits (299), Expect = 1e-31
 Identities = 101/313 (32%), Positives = 155/313 (49%), Gaps = 37/313 (11%)

Query: 11  VPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDIVHGGAIL------ 64
           V ++  G RLD+   +   +   + +S W + G+L VDGA   P D +  G ++      
Sbjct: 98  VQADDDGIRLDRWFQRHLPDVGFNIVSRWSRTGQLRVDGARAAPGDRIAEGQMIRVPPAE 157

Query: 65  -ELTAEQEAQGEWVAQDIELDIVYEDDDIL-------VINKPAGLVVHPAAG---HADGT 113
            ++ A  + +   V    E +I Y  D ++       VINKP GL          H D  
Sbjct: 158 PKVAAADKPKRVRVIDLTEDEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVD-R 216

Query: 114 LLNALLHHVPDIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECI 173
           LL+ L+          R  +VHRLDKDT+G +++A++ ++         SR+  ++Y  I
Sbjct: 217 LLDGLIFDAES-----RPKLVHRLDKDTSGALLLARSSRSAAHFAKAFSSRTARKVYWAI 271

Query: 174 VIGVV-VAGGKINAPIGRH-GQQRQRMAV-MEGGKQAVSHYRVLERFRSHTH-VRVKLET 229
           VIGV  +  G I  PI +  G   ++M V  E G  A + YRV+ER  +    V ++  T
Sbjct: 272 VIGVPSIDDGMIELPITKQPGTGGEKMHVDEEEGLPARTRYRVIERAGNRAAWVELQPYT 331

Query: 230 GRTHQIRVHMAHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPT 289
           GRTHQ+RVHMA I  PLVGD  YGG+        + +  S+    +  LHAR + +DHP 
Sbjct: 332 GRTHQLRVHMAAIGHPLVGDGKYGGK-------DSFLSGSISR--KMHLHARRIRVDHPD 382

Query: 290 SGKRMSWESPLPD 302
            G R+  ++ LP+
Sbjct: 383 GG-RIDMKAELPE 394