Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

 Score =  116 bits (291), Expect = 6e-31
 Identities = 85/255 (33%), Positives = 129/255 (50%), Gaps = 15/255 (5%)

Query: 10  EVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDIVHGGAILELTA- 68
           EV  EL GQR+D           ++ +   ++ G + V+   ++P   +  G I+ +   
Sbjct: 15  EVAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVRVPPV 74

Query: 69  ------EQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHV 122
                 E     + + Q +E  IVYED  ++V+NKPAG+ VH  +G + G ++ AL    
Sbjct: 75  RLPERDEPAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFG-VIEALRQLR 133

Query: 123 PDIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGG 182
           PD        +VHRLD+DT+GL+++AK       L   L+   V + Y  +V G      
Sbjct: 134 PD---AKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWPTSK 190

Query: 183 K-INAPIGRHG-QQRQRMA-VMEGGKQAVSHYRVLERFRSH-THVRVKLETGRTHQIRVH 238
           K +NAP+ +   +  +RM  V E GK+A++ +RVL RF    T V  +  TGRTHQIRVH
Sbjct: 191 KQVNAPLLKSNLRSGERMVEVNEEGKEALTLFRVLRRFGDFATIVEARPITGRTHQIRVH 250

Query: 239 MAHINFPLVGDPAYG 253
             H    + GD  YG
Sbjct: 251 TLHAGHMIAGDSKYG 265