Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 211 a.a., 23S rRNA (746) and tRNA (32) pseudouridine synthase from Pseudomonas putida KT2440

 Score =  109 bits (272), Expect = 7e-29
 Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 22/223 (9%)

Query: 83  LDIVYEDDDILVINKPAGLVVHP--AAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKD 140
           + I++ED  ILVINKP  L+  P  A  + D  +     +  PD +      IVHRLD +
Sbjct: 6   VQILFEDAAILVINKPTLLLSVPGRAEDNKDCLITRLQENGYPDAL------IVHRLDWE 59

Query: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGV-VVAGGKINAPIGRHGQQRQRMA 199
           T+G++++A+   +  +L  Q   R   + Y  +  G   +  G I+ P+      + R  
Sbjct: 60  TSGIILLARDADSHRELSRQFHDRETEKAYTALCWGQPALDSGSIDLPLRYDPPTKPRHV 119

Query: 200 V-MEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGGRFRI 258
           V  E GK A++ +R++ER   H  V +   TGR+HQ+RVHM  I  PL+GD  Y      
Sbjct: 120 VDHEQGKHALTFWRIVERCGDHCRVELTPITGRSHQLRVHMLSIGHPLLGDRLYAN---- 175

Query: 259 PPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESPLP 301
           P A +A          R  LHA  L   HP SG+R+ +E P P
Sbjct: 176 PQALAA--------HERLCLHASMLSFTHPVSGQRLKFECPAP 210