Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Dickeya dianthicola ME23

 Score =  377 bits (969), Expect = e-109
 Identities = 185/319 (57%), Positives = 234/319 (73%), Gaps = 1/319 (0%)

Query: 1   MSDKIELRAEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIVH 59
           MS +++L A V     GQRLDQ  A+LF ++SRSR+  WI + R+ ++G ++ +P++ V 
Sbjct: 1   MSQQVQLTATVAESQLGQRLDQALAELFPDYSRSRIKTWILEQRVQINGNMVDKPKEKVL 60

Query: 60  GGAILELTAEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALL 119
           GG  + + A  E    W AQ I LDIVYED DILVINKP  LVVHP AG+ DGT+LNALL
Sbjct: 61  GGESVAIDALIEEDARWEAQPISLDIVYEDGDILVINKPRNLVVHPGAGNPDGTVLNALL 120

Query: 120 HHVPDIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVV 179
           HH P+I++VPR GIVHRLDKDTTGLMVVAKT+ AQT+LV  LQ+R ++R YE + IG + 
Sbjct: 121 HHYPEIVDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMT 180

Query: 180 AGGKINAPIGRHGQQRQRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHM 239
           AGG +  PI RH  +R  MAV   GK AV+HYR++E FR+HT +R++LETGRTHQIRVHM
Sbjct: 181 AGGTVEEPIARHSTKRTHMAVHPMGKPAVTHYRIMEHFRAHTRLRLRLETGRTHQIRVHM 240

Query: 240 AHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESP 299
           AHIN PLVGDP YGGR R+P  AS T +++L+NF RQALHA  L L HP SG  M W +P
Sbjct: 241 AHINHPLVGDPLYGGRPRLPKGASETFIETLRNFDRQALHATMLRLYHPISGIEMEWHAP 300

Query: 300 LPDDLVWLLSLLKQDREAF 318
           LP D+V L++ LK D +AF
Sbjct: 301 LPQDMVDLIAALKADTDAF 319