Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

 Score =  212 bits (539), Expect = 1e-59
 Identities = 128/316 (40%), Positives = 188/316 (59%), Gaps = 31/316 (9%)

Query: 23  VAAQLFAEHSRSRLSAWIKDGRLTVDGA-VIRPRDIVHGGAILELTAEQEAQGEWVAQDI 81
           +  ++ ++ SRSRL A I+ G + ++G  V  P+  VH G  +E+   +        +DI
Sbjct: 29  LVGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDI 88

Query: 82  ELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIIN----VPRCGIVHRL 137
            LD+ YED+D++V+ KPAGLVVHP AG+  GTL+NAL++H  D ++    V R GIVHRL
Sbjct: 89  PLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRL 148

Query: 138 DKDTTGLMVVAKTIQAQTQLVTQL----QSRSVSRIYECIVIG-VVVAGGKINAPIGRHG 192
           DK+T+G+MVVAK   A   L  Q     ++  + R Y+ +V G      G ++A +GR G
Sbjct: 149 DKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGR-G 207

Query: 193 QQRQRMAVME----GGKQAVSHYRVLERFRSH-------THVRVKLETGRTHQIRVHMAH 241
             R + AV        ++A++HY V+ERF          + V  +LETGRTHQIRVHMAH
Sbjct: 208 TDRTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAH 267

Query: 242 INFPLVGDPAYGGRFRIPPAASATMVD-----SLKNFPRQALHARFLELDHPTSGKRMSW 296
           I  PL+GDP YG  FR      A ++D     ++  FPRQALHA  L  +HP +G+ M +
Sbjct: 268 IGHPLIGDPEYGAAFR----TKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEF 323

Query: 297 ESPLPDDLVWLLSLLK 312
           E+ +P+D+  L++ L+
Sbjct: 324 ETDMPEDMEELVTALR 339