Pairwise Alignments

Query, 341 a.a., DNA transporter from Pseudomonas simiae WCS417

Subject, 294 a.a., Outer membrane protein assembly factor BamD from Xanthobacter sp. DMC5

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 15/267 (5%)

Query: 6   LLLIAILAMTAACSSTKE-VVDENLSEVELYQLAQKDLDNNSFTSATAKLKALESRYPFG 64
           +L +A+  + + C+S K+  +  +    ++Y      L       A  + + ++  +P+ 
Sbjct: 30  VLALAMGLLVSGCASDKDDTIPPDEPAEKIYNEGLTLLRRQEPEKAAKRFEDVDRAHPYS 89

Query: 65  RYADQAQLELIYANYKNAEPEAAKSAAERFIRLHPQHPNVDYAYYMKGLTSFDQDVGLLA 124
            +A +A L   Y+ ++  + + A    +R+I L+P   +  YA Y+     ++       
Sbjct: 90  EWARKALLMTTYSYFEAGKYDEAIGVGKRYIALYPGSADAAYAQYLVASALYEN------ 143

Query: 125 RFLPLDMTKRDPGAARDSYNEFAQLTSRYPNSRYAPDAKQRMIYLRNLLASYEIHVAHYY 184
             +P D+T RD    R + +    +  +YPN+ YA  AK+++   R+ LA  E+ +  YY
Sbjct: 144 --IP-DIT-RDQRKTRQALDALEAVVRKYPNTEYAATAKRKIEVARDQLAGKEMAIGRYY 199

Query: 185 LTRQAYVAAANRGRYVVENFQETPSVGDGLAVMTEAYQRLHLDELASTSLETLKLNYPDH 244
           L ++ Y  A NR + VV  +Q T  V + L  +TE Y  + +   A T+   L  N+PD 
Sbjct: 200 LEQRNYTGAINRFKVVVTQYQTTRQVEEALYRLTECYMAMGIVGEAQTAAAVLGYNFPDS 259

Query: 245 PSLKDGQFVPQVAEAD----NRSWLSK 267
              KD   + Q   A+      SW+S+
Sbjct: 260 SWYKDAYKLVQSGGAEPQENKASWISQ 286