Pairwise Alignments

Query, 512 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 469 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  130 bits (327), Expect = 1e-34
 Identities = 142/497 (28%), Positives = 215/497 (43%), Gaps = 42/497 (8%)

Query: 3   LLKSLAAVSSITMISRVLGFVRDTLLARIFGASMATDAFFIAFKLPNLLRRIFAEGAFSQ 62
           +L S A ++  T++   LGF R+ LL   +GA   +DAF IA  LP  LR   A G  S 
Sbjct: 1   MLGSAAWLTLATLLGLCLGFAREWLLVAAWGAGERSDAFLIALFLPEALRMSLAGGVLSA 60

Query: 63  AFVPILAEYKTQQGEEATRTFIAYVSGLLTLVLMLVTLLGMLAAPWVIWATAPGFANTPE 122
           A +P+   Y  ++ +E      A    LL L+ ++ +LL  L APW++    PG A +  
Sbjct: 61  AALPL---YLARKDDERLGWLAALFPALL-LIALVTSLLLTLLAPWLVQLLGPGLAASAT 116

Query: 123 KFALTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVSMIIFALFLTPYF 182
             AL +  L++    +  + L +L    L    RF +      L N+  + +        
Sbjct: 117 --ALASSNLQIVAWCVPGLMLHALFSIPLQASERFVLAGLGSLLFNLPPVTYLALAGTAT 174

Query: 183 DPPVMALGWAVLAGGLAQLLYQLPHLKKIG----MLVLPRLNLKDTGVWRVMRNMLPAIL 238
            P  +AL  A LAG L   L  LP + + G       LP   L++ G     + + P +L
Sbjct: 175 QPHALAL--ACLAGSLLMPLALLPSMWRQGWRPWCWQLPWAPLRELG-----QRIGPLLL 227

Query: 239 GVSVSQISLIINTAFASLLVSGSVSWMYYADRLMELPSGVLGVALGTILLPTLARTYASK 298
               SQ   +I    ASLL  G+V+W+  A +LM LP   L ++L  +LL  ++R    +
Sbjct: 228 SNGASQGLALIERLVASLLGEGAVTWVNLARKLMNLPLIAL-MSLNQVLLGMMSR----R 282

Query: 299 DRQEYSRILDWGLRLCFVLVLPCALALGILAEPLTVALFQYGQFDAHDALMTQHALIAYS 358
              E   +L  GL    VL LP  + L   A  L   L      D+   L+    L  ++
Sbjct: 283 QGDERLALLKRGLETASVLTLPAGVGLVAAAPSLVALLLPAQSLDSPLPLL----LAWFA 338

Query: 359 VGLLGIIVIKVLAPGFYAQQNIRTPVKIAIFTLIVTQLLNLVFIGPLAHAGLALAISAGA 418
           V L+      +LA   YA  + R P++  +   +V  LL  V       AG+ LA  AG 
Sbjct: 339 VPLVFGAWNALLARYAYAAGDTRQPLRCELLGSLVNALLLGVLPFVFGLAGIPLAALAGV 398

Query: 419 CINAGLLFYQLRKQQMFQPQPGWGLFALKLLVAVGVMSAVLLGLMHFMPAWDEGHMLERF 478
              A LL   +++Q +    P    +A   L+   +M    L L      W         
Sbjct: 399 ICTALLL---MQRQALLSALP----WARSWLLNAVLMGVAALALFRIEGVW--------- 442

Query: 479 LRLGVLVVAGVVVYFGM 495
           L+LG+  +AG VV  GM
Sbjct: 443 LQLGLSTLAGAVVLLGM 459