Pairwise Alignments

Query, 366 a.a., GTP-binding protein from Pseudomonas simiae WCS417

Subject, 366 a.a., GTP-binding and nucleic acid-binding protein YchF from Sphingobium sp. HT1-2

 Score =  388 bits (997), Expect = e-112
 Identities = 208/368 (56%), Positives = 254/368 (69%), Gaps = 4/368 (1%)

Query: 1   MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDPRLDALAAIVN 59
           MGF CGIVGLPNVGKSTLFNALT++  A A N+PFCTIEPN G V +PD RL  +A I  
Sbjct: 1   MGFRCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNEGRVAVPDDRLQTIARIGG 60

Query: 60  PKRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSV 119
             +I+ T + FVDIAGLV GASKGEGLGN+FLANIRETDAI HV+RCFED+++ HV   V
Sbjct: 61  SAKIIETQLAFVDIAGLVRGASKGEGLGNQFLANIRETDAIVHVLRCFEDDDITHVEGKV 120

Query: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVVQKGLLEQLIAHFTLGKPAR 179
           DP  D E ++ EL+ ADL+S EK++  + +    GDK+A     +L Q +     GKPAR
Sbjct: 121 DPIADAETVETELMLADLESLEKRVPNLLKKGAQGDKEAKAAASVLGQTLELLRDGKPAR 180

Query: 180 SLMKTMGADEKAVIKGFHLLTTKPVMYIANVAEDGF-ENNPLLDVVKAIADEEGAIVVPV 238
            L +    +E  +     LLT KPV+Y+ NV E    E N     V   A  E A  V V
Sbjct: 181 -LTQPRDEEEARLFAQAQLLTAKPVLYVCNVEEGAAAEGNAFSARVFEKAAAENASAVIV 239

Query: 239 CNKIEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYEMLNLQTYFTAGVEEVRAWTV 298
              IEAE+  +   EE+  +LEALGL E GL R+IRAGYE+L L T+FT G +E RAWTV
Sbjct: 240 SAAIEAELITMPV-EERGEYLEALGLTEAGLARIIRAGYELLGLITFFTVGPKEARAWTV 298

Query: 299 KVGATAPQAAGVIHTDFEKGFIRAEVIAYNDFIQFKGEAGAKEAGKWRLEGKEYIVKDGD 358
             G+ APQAAG IH+DFEKGFIRAE +AY D++QF GEAGAKEAGKWR EGK+Y+ +DGD
Sbjct: 299 AKGSKAPQAAGAIHSDFEKGFIRAETMAYADYVQFNGEAGAKEAGKWRSEGKDYVTQDGD 358

Query: 359 VMHFRFNV 366
           +M FRFNV
Sbjct: 359 IMLFRFNV 366