Pairwise Alignments

Query, 713 a.a., secretin from Pseudomonas simiae WCS417

Subject, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 52/303 (17%)

Query: 290 STSRIRVEADVRNNAVLIYDLPERQTMYRELITQLDVARKLIEIDAIILDIERTQLREFG 349
           S   + ++AD   N +LI          RE+I  LD  R  + I+++I+++      EFG
Sbjct: 411 SAGGVTIQADATTNTLLISAPDPLYRNLREVIDMLDQRRAQVVIESLIVEVGEDDATEFG 470

Query: 350 VNWGFQNSRFRG----------GVNMAPGTSSQLSIDNRDRFY--------ADI------ 385
           V W   N   +G          GVN  P  +S+ SID   +           DI      
Sbjct: 471 VQWQAGNLGGKGGFGGVNLGGSGVNSTP--TSKTSIDVLPKGLNVGLVDGTVDIPGIGKV 528

Query: 386 -------RALEAKGLATMVSNPSVLTLENQPAVIDFNRT------QYITPG-----RDYA 427
                  RAL++KG   ++S P++LTL+N+ A I   +T       Y+T G       + 
Sbjct: 529 LDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQ 588

Query: 428 TILPVTVGTSLQVVPRVTTGRGVH-QIHLAVDIEDGNFDETNPDRDPNHPDVRRGKVSTQ 486
           T+    VG  L V P+++ G  V   I+  V   D     T            +  + T 
Sbjct: 589 TVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTVDERASVT------AGTVTNKRAIDTS 642

Query: 487 AVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKALFSSTERHNNRRERLFILTPRV 546
            ++ + + +V+GG      S     +P L DIP LG ALF + +R  ++   +  L P +
Sbjct: 643 ILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLG-ALFRNEKRSVSKTNLMVFLRPYI 701

Query: 547 IGD 549
           I D
Sbjct: 702 IRD 704



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 271 NGTTGQMAPMPA--LTSRAPVSTSRIRVEADVRNNAVLIYD-LPERQTMYRELITQLDVA 327
           NG    +A M +  L ++    T +I V  D R+N+++I    PER  + R LI +LD A
Sbjct: 254 NGIAVDIAAMVSELLETQGADQTQKINVIGDPRSNSIIIRSGSPERTELARNLIYKLDNA 313

Query: 328 R 328
           +
Sbjct: 314 Q 314