Pairwise Alignments

Query, 713 a.a., secretin from Pseudomonas simiae WCS417

Subject, 412 a.a., predicted fimbrial transporter (NCBI) from Escherichia coli BW25113

 Score = 82.4 bits (202), Expect = 4e-20
 Identities = 75/324 (23%), Positives = 138/324 (42%), Gaps = 31/324 (9%)

Query: 244 RPASQPAPLTPNVPRLGNPLLSQMLDANGTTGQMAPMPALTSRAPVSTSRIRVEADVRNN 303
           R  ++ A    N+P     +  Q  DA    G++A      +   + +++  +  D R N
Sbjct: 103 RQEAEQARAQANLPLENRSITLQYADA----GELAK-----AGEKLLSAKGSMTVDKRTN 153

Query: 304 AVLIYDLPERQTMYRELITQLDVARKLIEIDAIILDIERTQLREFGVNWGFQNSRFRGGV 363
            +L+ D     +   + + Q+D+    +E+ A I+ I    LRE GV W   +++  GGV
Sbjct: 154 RLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGV 213

Query: 364 NMAPGTSSQLSID-------------NRDRFYADIRALEAKGLATMVSNPSVLTLENQPA 410
                  S LS+              N      ++ ALE K    ++++P +L    QPA
Sbjct: 214 GQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPA 273

Query: 411 VIDFNR--TQYITPGRDYATILPVTVGT-SLQVVPRV-TTGRGVHQIHLAVDIEDGNFDE 466
            I         ++ G   AT +        ++V P V   GR   ++H++ ++      +
Sbjct: 274 SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP----GQ 329

Query: 467 TNPDRDPNHPDVRRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKALF 526
                D     + + ++ TQ  ++   +L +GG     +   Q  +PLLGDIP  G+ LF
Sbjct: 330 VLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQ-LF 388

Query: 527 SSTERHNNRRERLFILTPRVIGDQ 550
               + + RRE +  +TPR++  +
Sbjct: 389 RHDGKEDERRELVVFITPRLVSSE 412