Pairwise Alignments

Query, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

Subject, 364 a.a., Flagellar biosynthesis protein FlhB from Variovorax sp. SCN45

 Score =  149 bits (376), Expect = 1e-40
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 13/343 (3%)

Query: 6   EKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIAL---FTAETSLQRFQQLMLLP 62
           ++   A+  KL+  R++GQ A+S DV   +  T  +       F A  +  RF Q +L+ 
Sbjct: 7   DRNEAATPYKLQRARERGQAAKSTDVVGAIVFTVAAVYLTWRGFGAVATQFRFDQAVLIQ 66

Query: 63  ISRLNQPFTRALEEVLFDGLGVFFSFALLMVGVAITTKLISSWMQFGLLFAPEALKMDFN 122
             R++ P    L  +    L   F  +       +   ++ + MQ G + + + +KMDFN
Sbjct: 67  AGRMD-PSGAGLWPLTERALRAVFVLSAPFFATVMLAAVVGNMMQTGPMLSFDPVKMDFN 125

Query: 123 RLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLINLATSDLQSYIVAL 182
           R+NPV+ +K++FS + L +   ++ K  L+GL+  + ++  +G    LA+     Y   L
Sbjct: 126 RINPVNGLKRLFSMRVLFDTARALIKLTLLGLVSVLALKALLGQFYGLASLSPIGY---L 182

Query: 183 IALFRHLLHVCLGMLLVL---ALVDLILSKHFFAKRMRMTQVEVVKEYKDMEGDPHVKGQ 239
             L   L  V L M LVL   AL+DL+ ++  FAK+MRM+Q ++  E K  +GDP ++ +
Sbjct: 183 RTLLDDLSSVALKMALVLGLIALLDLMYTRREFAKKMRMSQRDIKDEAKHRDGDPRIRAR 242

Query: 240 RRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEARK 299
            R L  +  +    + L +   +D+L+ NPTHFAVAL Y  G+   P L++KG+   A  
Sbjct: 243 LRELRRETLKR--SLALRETRNADVLITNPTHFAVALKYDHGRMVSPQLLAKGSGHMAAA 300

Query: 300 LIRRAKAADVPVIQCVWLARTLYTK-KLGASIPRETLQAVALI 341
           +   A    +PV+Q   LAR LY +  +  ++P E    VA I
Sbjct: 301 MREIAARHGIPVVQNPPLARRLYRELPVDQAVPPELYAQVARI 343