Pairwise Alignments

Query, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

Subject, 384 a.a., Flagellar biosynthesis protein FlhB from Variovorax sp. SCN45

 Score =  153 bits (386), Expect = 8e-42
 Identities = 110/356 (30%), Positives = 190/356 (53%), Gaps = 26/356 (7%)

Query: 6   EKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTA-------ETSLQR---F 55
           EK  PAS ++L   R++G VA+S+++   + L   S    F+A       + SL+R   F
Sbjct: 8   EKTEPASERRLEKAREEGNVARSRELTTFVMLGTASAGLWFSAGLLSESMDGSLRRGLQF 67

Query: 56  QQLMLLPISR-LNQPFTRALEEVLFDGLGVFFSFALLMVGVAITTKLISSWMQFGLLFAP 114
           ++      S  L Q    AL+ ++  G      F ++MV       ++  WM     F+ 
Sbjct: 68  ERASAFDTSHMLAQTGLMALQTLMAIGP----LFGMMMVAAVAAPLMLGGWM-----FSA 118

Query: 115 EALKMDFNRLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLINLATSD 174
           EA+   F+++NP+S + +MFSAQ L  L+ ++ K+ LIG + + VI   +GT++ L    
Sbjct: 119 EAVAPKFSKINPLSGIARMFSAQSLAELVKALAKSALIGGVAWWVIASDIGTVMALMAQP 178

Query: 175 LQSYIV-ALIALFRHLLHVCLGMLLVLALVDLILSKHFFAKRMRMTQVEVVKEYKDMEGD 233
               +  AL+ + +H + +   + LV AL+D+      + +++RM++ ++ +E+K+ EGD
Sbjct: 179 AHYALPHALVLVAKHCVLIAATLFLV-ALIDVPFQLWSYYRKLRMSREDLRQEHKESEGD 237

Query: 234 PHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGT 293
           PH+K Q R    Q+A+     ++PK   +D+++ NPTHFAVAL Y       P +V+KGT
Sbjct: 238 PHIKAQIRRQQQQIAKRRMMSEVPK---ADIVLTNPTHFAVALKYLDSDMRAPRVVAKGT 294

Query: 294 DDEARKLIRRAKAADVPVIQCVWLARTLYT-KKLGASIPRETLQAVALIYRTLREL 348
           D  A ++   AK  +V +++   L R+LY   K+G  IP     AVA +   + +L
Sbjct: 295 DLVAARIRELAKEHNVAILEAPPLTRSLYKHTKVGDEIPSGLYTAVAEVLAWVYQL 350