Pairwise Alignments

Query, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

Subject, 380 a.a., flagellin export apparatus, substrate specificity protein from Pseudomonas putida KT2440

 Score =  136 bits (343), Expect = 8e-37
 Identities = 119/391 (30%), Positives = 199/391 (50%), Gaps = 43/391 (10%)

Query: 2   SDSGEKK-HPASAKKLRDQRKKGQVAQSQDVAKL-LALTAISEIALF---TAETSLQRFQ 56
           S+SG+ K    + K+ RD R+KG+VA+S+++  + + L     +  F    AET      
Sbjct: 4   SESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAET------ 57

Query: 57  QLMLLPISRLNQPFTRALEEVLFD--GLGVFFSFALLMVGVAITTKLISSWMQF------ 108
              LL + R+N   TR   +++ D   +G F   +  M   A+   LI  ++        
Sbjct: 58  ---LLALMRMNFSLTR---DIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSFVAPIA 111

Query: 109 --GLLFAPEALKMDFNRLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGT 166
             G LF+   L+  F+R+NP+S +K+MFS Q L  LL ++ K F+I ++  VV+      
Sbjct: 112 LSGFLFSGSLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQA 171

Query: 167 LINLATSDLQSYIV-ALIALFRHLLHVCLGMLLVLALVDLILSKHFFAKRMRMTQVEVVK 225
           L+++A   L+  I+ +L  +    L +  G+LL+ A  D+    +   K+M+MT+ EV  
Sbjct: 172 LLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLI-AAADVPFQLYQTHKKMKMTKQEVRD 230

Query: 226 EYKDMEGDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGK-TP 284
           EYKD EG P VK + R L  +++Q      +P   ++D+++ NPTH+AVAL Y P K   
Sbjct: 231 EYKDSEGKPEVKQRIRQLQREVSQRRMMAAVP---DADVIITNPTHYAVALQYDPEKGGA 287

Query: 285 LPMLVSKGTDDEARKLIRRAKAADVPVIQCVWLARTL-YTKKLGASIPRETLQAVALI-- 341
            P+L++KG+D  A K+       ++ +++   LAR + Y+ +L   IP     AVA +  
Sbjct: 288 APLLLAKGSDFMALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLA 347

Query: 342 -------YRTLRELDDEAKRETLELPELERR 365
                  YR  +    E  ++ L +P   RR
Sbjct: 348 YVFQIRQYRAGKGKRPEPLKDDLPIPPDLRR 378