Pairwise Alignments

Query, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

Subject, 382 a.a., flagellar biosynthesis protein FlhB from Escherichia coli ECOR38

 Score =  125 bits (313), Expect = 2e-33
 Identities = 98/347 (28%), Positives = 176/347 (50%), Gaps = 20/347 (5%)

Query: 3   DSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLLP 62
           +S +K    +  +L   R++GQ+ +S+++  LL L     +  F   +  +R   ++   
Sbjct: 4   ESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAG 63

Query: 63  I----SRLNQPFTRALEEVLFDGLGVFFSFALLMVGVAITTKLISSWMQFGLLFAPEALK 118
           +    S +N P    L +++        +   L+ GV +   LIS  M  GL+F+ ++L+
Sbjct: 64  LHFDHSIINDP-NLILGQIILLIREAMLALLPLISGVVLVA-LISPVMLGGLVFSGKSLQ 121

Query: 119 MDFNRLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLINLATSDLQSY 178
             F++LNP+  +K++FSAQ    LL ++ K  L+G +    +      ++ L     +S 
Sbjct: 122 PKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMA---ESP 178

Query: 179 IVALIALFRHLLHVCLGMLLVLALVDLILSKHFF-----AKRMRMTQVEVVKEYKDMEGD 233
           I A+      L+ +C  +L+VL ++ ++    FF      K++RM++ ++  E+K  EGD
Sbjct: 179 ITAM-GNAMDLVGLC-ALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGD 236

Query: 234 PHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGT 293
           PHVKG+ R +    A+      +PK   +D++V NPTH++VAL Y   K   P +V+KG 
Sbjct: 237 PHVKGRIRQMQRAAARRRMMADVPK---ADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 293

Query: 294 DDEARKLIRRAKAADVPVIQCVWLARTLYT-KKLGASIPRETLQAVA 339
              A ++       +VP ++   LAR LY   ++G  IP +   AVA
Sbjct: 294 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVA 340