Pairwise Alignments

Query, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

Subject, 360 a.a., Flagellar biosynthetic protein FlhB from Azospirillum sp. SherDot2

 Score =  120 bits (301), Expect = 6e-32
 Identities = 90/350 (25%), Positives = 169/350 (48%), Gaps = 24/350 (6%)

Query: 3   DSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLLP 62
           D  +K    + K+LR+  +KG V +++DV  L A+ A   I L            L+L  
Sbjct: 5   DDEQKTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMAVPGVAASLSALLL-- 62

Query: 63  ISRLNQPFTRALEEVLFDG--LGVFFSFALLMVGVAITTK----------LISSWMQFGL 110
                 P     +++  DG  + V  S   L+ GVA+              +S+  Q   
Sbjct: 63  ------PLIENPDDIRIDGSAIDVIHSLHWLIGGVAVALLPVLGILLAGVAVSALGQGQF 116

Query: 111 LFAPEALKMDFNRLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLINL 170
           + A + ++  ++ L+P S   ++     L+    S+ K  +I    +  + P +    + 
Sbjct: 117 VVASDRIRPKWSHLSPASGWTRIAGRPALVEFAKSLVKLAIISAAAWHALAPYIAWTEDT 176

Query: 171 ATSDLQSYIVALIALFRHLLHVCLGMLLVLALVDLILSKHFFAKRMRMTQVEVVKEYKDM 230
              D+    V L  +   LL   L   +++A VD++ ++  + +R+RM+  E+  E+K +
Sbjct: 177 VGMDVAGLPVLLRDVTLRLLLAVLLATVLMAAVDVLWNRMEWRRRLRMSHQEIKDEFKQI 236

Query: 231 EGDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVS 290
           EGDP+ K + R +    +++     +P+   + +++ NPTHFAVAL Y  G+T  P+ ++
Sbjct: 237 EGDPNAKARLRDIRRSRSKKRMMANVPR---ATVVITNPTHFAVALEYERGRTAAPICLA 293

Query: 291 KGTDDEARKLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLQAVA 339
           KG D  A ++   A+  ++P+++   LAR L+ T ++ A+IP +  QAVA
Sbjct: 294 KGADLIALRIRALAQEHNIPIVENPPLARALHATAEVDATIPLQHYQAVA 343